Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 RNA5SP493-201ENST00000364115 91 ntBASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.243-201ENST00000364481 109 ntBASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 HMGN2P39-201ENST00000398005 273 ntBASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 AL117342.1-201ENST00000404861 406 ntBASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 RNA5SP475-201ENST00000410568 110 ntBASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 RNU5A-5P-201ENST00000411054 116 ntBASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 RNU1-131P-201ENST00000458943 161 ntBASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 AP001282.2-201ENST00000616149 309 ntBASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 AC006001.4-201ENST00000622243 395 ntBASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.124-201ENST00000363339 93 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.144-201ENST00000363521 113 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.149-201ENST00000363558 117 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.287-201ENST00000364853 94 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.331-201ENST00000365267 102 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 SNORA20B-201ENST00000384220 132 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 MIR597-201ENST00000384968 97 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 RNU6-1203P-201ENST00000410703 110 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 AL158823.1-201ENST00000418441 478 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 SNORD65B-201ENST00000459126 73 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 AC114982.1-201ENST00000469402 321 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 RPL36AP21-201ENST00000490372 323 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 RNU6-436P-201ENST00000516171 114 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 RNU2-34P-201ENST00000516534 121 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 RNU7-110P-201ENST00000516891 62 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 RNU6-570P-201ENST00000517051 105 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 AC011373.1-201ENST00000607270 237 ntBASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
UPF3AQ9H1J1 SNORA33-201ENST00000363664 130 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.193-201ENST00000363979 102 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 RNA5SP363-201ENST00000365072 115 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.418-201ENST00000384029 102 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 RNU6-1310P-201ENST00000384153 107 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.518-201ENST00000384552 113 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 RNU6-160P-201ENST00000384591 107 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 MIR518A2-201ENST00000384966 87 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 AC099677.2-201ENST00000436385 175 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 HMGN2P34-201ENST00000437647 269 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.668-201ENST00000516233 93 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 RNU6-155P-201ENST00000516347 100 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 RNU1-92P-201ENST00000517017 135 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 AC026271.5-201ENST00000577873 130 ntBASIC1.66□□□□□ -2.14
UPF3AQ9H1J1 RNU1-58P-201ENST00000362413 163 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 SNORA72.2-201ENST00000365028 127 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 RNU6-463P-201ENST00000384340 107 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AL031003.1-201ENST00000404229 172 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AC244636.1-201ENST00000421152 228 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AL354695.1-201ENST00000427935 228 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AL135790.2-201ENST00000437701 267 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 MRPS10P1-201ENST00000448483 130 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AC005042.3-201ENST00000453230 174 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 RNU1-123P-201ENST00000458950 160 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AC011406.1-201ENST00000512440 370 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 RNA5SP445-201ENST00000515889 115 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 RNU6-1143P-201ENST00000516125 104 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 RNU6-1041P-201ENST00000516254 102 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 MIR3145-201ENST00000580727 82 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 SNORD113-5-201ENST00000607261 78 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AL773524.1-201ENST00000614065 229 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AL159152.1-201ENST00000635019 2587 ntBASIC1.65□□□□□ -2.15
UPF3AQ9H1J1 AC010615.1-201ENST00000594254 1764 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.172-201ENST00000363765 102 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.329-201ENST00000365209 107 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.461-201ENST00000384263 103 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 RNU6-505P-201ENST00000384427 107 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 SEPT14P8-201ENST00000508026 178 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 RNU7-128P-201ENST00000517247 62 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 AC027419.1-201ENST00000522976 328 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 DEFB117-201ENST00000602356 141 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 AL157834.3-201ENST00000615543 103 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 AL353770.2-201ENST00000620024 78 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 7SK.10-201ENST00000621414 298 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 MIR338-201ENST00000636369 67 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 U6.108-201ENST00000637764 58 ntBASIC1.64□□□□□ -2.15
UPF3AQ9H1J1 SNORA27.1-201ENST00000362604 124 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 RNU6-23P-201ENST00000363283 107 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.237-201ENST00000364439 102 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 RNU6-1240P-201ENST00000365155 104 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 RNU6-290P-201ENST00000365212 101 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.383-201ENST00000383855 97 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 MIR489-201ENST00000384923 84 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 RNU2-61P-201ENST00000411069 191 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 AC074290.1-201ENST00000448883 135 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 TRBVB-201ENST00000477100 408 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 HMGN1P7-201ENST00000491722 313 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 MTND1P19-201ENST00000511780 315 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 RNU6-1338P-201ENST00000516328 91 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 SUMO2P18-201ENST00000518873 252 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 AC023157.2-201ENST00000540596 141 ntBASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 AL353149.1-201ENST00000610667 244 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 216.5 ms