| BEGAIN | Q9BUH8 | SNORD77.3-201 | ENST00000391113 | 65 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | FTH1P12-201 | ENST00000432137 | 551 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | RNU7-94P-201 | ENST00000459576 | 63 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | AC022217.4-201 | ENST00000604389 | 163 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | AL591926.4-201 | ENST00000616895 | 298 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | U6.108-201 | ENST00000637764 | 58 nt | BASIC | 3.93 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | Y_RNA.495-201 | ENST00000384435 | 112 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | MIR802-201 | ENST00000390235 | 94 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | RNA5SP323-201 | ENST00000391094 | 133 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | FO680682.1-201 | ENST00000421261 | 345 nt | TSL 3 BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | AC022018.1-201 | ENST00000430685 | 241 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | RPS29P31-201 | ENST00000446147 | 164 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | RNU1-131P-201 | ENST00000458943 | 161 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | RN7SL863P-201 | ENST00000462370 | 296 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | AC122707.1-201 | ENST00000502882 | 219 nt | TSL 2 BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | AC110009.1-201 | ENST00000512965 | 451 nt | TSL 5 BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | SNORA72.7-201 | ENST00000516349 | 94 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | AC068657.1-201 | ENST00000520807 | 306 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | AP002004.2-201 | ENST00000531656 | 154 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | ELOCP29-201 | ENST00000588193 | 334 nt | BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | TMCO5A-203 | ENST00000558158 | 2894 nt | APPRIS ALT2 TSL 3 BASIC | 3.92 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | Y_RNA.99-201 | ENST00000363138 | 105 nt | BASIC | 3.91 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | Y_RNA.281-201 | ENST00000364774 | 94 nt | BASIC | 3.91 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | MIR548A2-201 | ENST00000384956 | 97 nt | BASIC | 3.91 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | MIR504-201 | ENST00000385065 | 83 nt | BASIC | 3.91 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | AL592431.2-201 | ENST00000422198 | 171 nt | TSL 3 BASIC | 3.91 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | AL049830.1-201 | ENST00000468034 | 425 nt | BASIC | 3.91 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | RN7SL636P-201 | ENST00000497504 | 294 nt | BASIC | 3.91 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | AL137067.1-201 | ENST00000615933 | 120 nt | BASIC | 3.91 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | MIR4679-1-201 | ENST00000637619 | 75 nt | BASIC | 3.91 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | PRRG1-202 | ENST00000449135 | 4481 nt | APPRIS P1 TSL 1 (best) BASIC | 3.91 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | WDR72-201 | ENST00000360509 | 5887 nt | APPRIS P2 TSL 1 (best) BASIC | 3.9 | □□□□□ -1.78 | | |
| BEGAIN | Q9BUH8 | MIR450A1-201 | ENST00000362262 | 91 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RNA5SP125-201 | ENST00000364843 | 120 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | MIR570-201 | ENST00000384917 | 97 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | MIR522-201 | ENST00000385071 | 87 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RNU6-220P-201 | ENST00000390919 | 107 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AL159169.1-201 | ENST00000421119 | 127 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC003685.2-201 | ENST00000422795 | 395 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | LINC02532-205 | ENST00000430094 | 628 nt | TSL 5 BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | CALM2P4-201 | ENST00000430810 | 426 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC234781.5-202 | ENST00000453508 | 426 nt | TSL 3 BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | ITCH-AS1-201 | ENST00000454205 | 299 nt | TSL 5 BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RPS29P24-201 | ENST00000486345 | 171 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC018868.1-201 | ENST00000491307 | 315 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RPL31P61-201 | ENST00000496160 | 376 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC008892.1-201 | ENST00000511861 | 384 nt | TSL 3 BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | SCARNA15-202 | ENST00000516881 | 127 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC024995.1-201 | ENST00000523014 | 93 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC008115.2-201 | ENST00000539988 | 241 nt | TSL 3 BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC091544.4-201 | ENST00000555268 | 342 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | uc_338.28-201 | ENST00000612082 | 187 nt | BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | FER-201 | ENST00000281092 | 12119 nt | APPRIS P1 TSL 1 (best) BASIC | 3.9 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | IQCH-201 | ENST00000335894 | 4208 nt | APPRIS P1 TSL 1 (best) BASIC | 3.89 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | IPO8P1-201 | ENST00000455509 | 3109 nt | BASIC | 3.89 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | PALMD-205 | ENST00000615664 | 1844 nt | TSL 5 BASIC | 3.89 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | SNORD21-201 | ENST00000383953 | 95 nt | BASIC | 3.89 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | ATP5J2P3-201 | ENST00000451550 | 258 nt | BASIC | 3.89 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RN7SL330P-201 | ENST00000469709 | 307 nt | BASIC | 3.89 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC007012.1-201 | ENST00000567192 | 175 nt | BASIC | 3.89 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | MIR5197-201 | ENST00000583721 | 112 nt | BASIC | 3.89 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | LINC01900-203 | ENST00000585185 | 393 nt | TSL 3 BASIC | 3.89 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | LINC00645-203 | ENST00000557399 | 3512 nt | TSL 1 (best) BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RNF38-210 | ENST00000611646 | 5185 nt | TSL 5 BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | MIR423-201 | ENST00000362201 | 94 nt | BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | SNORA25B-201 | ENST00000365507 | 128 nt | BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | SNORA8-201 | ENST00000384574 | 139 nt | BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | MIR518F-201 | ENST00000384973 | 87 nt | BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | TRDJ3-201 | ENST00000390476 | 59 nt | APPRIS P1 BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RHEBP3-201 | ENST00000411920 | 351 nt | BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | COX6CP6-201 | ENST00000490840 | 228 nt | BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC091826.1-201 | ENST00000514065 | 313 nt | BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | MIR3616-201 | ENST00000584070 | 92 nt | BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC118755.2-201 | ENST00000584676 | 212 nt | TSL 3 BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | ZNF334-205 | ENST00000615481 | 3706 nt | APPRIS ALT2 TSL 5 BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | EVI5-201 | ENST00000370331 | 7403 nt | APPRIS P3 TSL 1 (best) BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | ROCK2-203 | ENST00000401753 | 4017 nt | TSL 1 (best) BASIC | 3.88 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC093725.1-201 | ENST00000508135 | 2672 nt | TSL 5 BASIC | 3.87 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | SNORA1B-201 | ENST00000362535 | 133 nt | BASIC | 3.87 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | Y_RNA.410-201 | ENST00000383992 | 113 nt | BASIC | 3.87 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | MIR887-201 | ENST00000401258 | 79 nt | BASIC | 3.87 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RNA5SP184-201 | ENST00000411071 | 108 nt | BASIC | 3.87 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC068295.1-201 | ENST00000413056 | 153 nt | TSL 3 BASIC | 3.87 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RNU6-579P-201 | ENST00000516879 | 102 nt | BASIC | 3.87 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC134878.1-201 | ENST00000619901 | 243 nt | BASIC | 3.87 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | OSBPL8-202 | ENST00000393249 | 7047 nt | APPRIS ALT1 TSL 1 (best) BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | OTUD6B-AS1-201 | ENST00000522817 | 4275 nt | TSL 2 BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | ERMN-205 | ENST00000410096 | 3793 nt | APPRIS P1 TSL 1 (best) BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RNU6-1107P-201 | ENST00000364817 | 104 nt | BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RNU6-106P-201 | ENST00000384405 | 107 nt | BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | RNU6-160P-201 | ENST00000384591 | 107 nt | BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | TRAJ31-201 | ENST00000390506 | 57 nt | APPRIS P1 BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | CST2P1-201 | ENST00000425770 | 87 nt | BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | TRBV12-2-201 | ENST00000489763 | 344 nt | BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC011461.1-201 | ENST00000592671 | 357 nt | TSL 3 BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | ZNFX1-AS1_2.1-201 | ENST00000610973 | 93 nt | BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | FANCD2-213 | ENST00000625535 | 117 nt | TSL 5 BASIC | 3.86 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | LEPR-202 | ENST00000349533 | 8227 nt | APPRIS P1 TSL 1 (best) BASIC | 3.85 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | AC025164.2-202 | ENST00000499685 | 5699 nt | TSL 3 BASIC | 3.85 | □□□□□ -1.79 | | |
| BEGAIN | Q9BUH8 | MFSD8-233 | ENST00000641482 | 4860 nt | BASIC | 3.85 | □□□□□ -1.79 | | |