Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.06□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.456-201ENST00000384232 111 ntBASIC2.06□□□□□ -2.08
PAAF1Q9BRP4 RNU6-482P-201ENST00000391068 107 ntBASIC2.06□□□□□ -2.08
PAAF1Q9BRP4 AC019129.1-201ENST00000403786 261 ntBASIC2.06□□□□□ -2.08
PAAF1Q9BRP4 MIR548H3-201ENST00000408771 118 ntBASIC2.06□□□□□ -2.08
PAAF1Q9BRP4 SNORA27.4-201ENST00000516650 95 ntBASIC2.06□□□□□ -2.08
PAAF1Q9BRP4 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.06□□□□□ -2.08
PAAF1Q9BRP4 AC068647.2-201ENST00000637380 353 ntBASIC2.06□□□□□ -2.08
PAAF1Q9BRP4 ZNF702P-202ENST00000434269 1966 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 SNORA16B-201ENST00000364674 135 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.368-201ENST00000365547 113 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 RNU6-662P-201ENST00000384253 104 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.477-201ENST00000384352 108 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 SNORD116-13-201ENST00000384408 92 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 AC069257.2-201ENST00000441819 155 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 RPS20P10-201ENST00000451209 253 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 RPS29P11-201ENST00000496507 171 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 SNORA31.11-201ENST00000516528 139 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 AC084364.2-201ENST00000546924 395 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 MIR4287-201ENST00000579398 78 ntBASIC2.05□□□□□ -2.08
PAAF1Q9BRP4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 RNU1-17P-201ENST00000363022 152 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.172-201ENST00000363765 102 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.352-201ENST00000365439 102 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 RNA5SP511-201ENST00000410487 115 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.618-201ENST00000410949 107 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 AL603825.1-201ENST00000438481 80 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 RNU7-94P-201ENST00000459576 63 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 RNA5SP182-201ENST00000516064 82 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 AC136628.3-201ENST00000521868 290 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 AC005972.2-201ENST00000604690 348 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 U2.14-201ENST00000615943 113 ntBASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.04□□□□□ -2.08
PAAF1Q9BRP4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.267-201ENST00000364679 109 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.307-201ENST00000365022 117 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.310-201ENST00000365063 113 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 MIR9-3-201ENST00000385084 90 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 AL603910.2-201ENST00000407268 136 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.621-201ENST00000411065 96 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 BTF3P11-201ENST00000426582 477 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 AC233266.1-201ENST00000454518 96 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 AC025033.1-201ENST00000463883 194 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.679-201ENST00000516416 91 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 MIR5694-201ENST00000581190 76 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 AC002984.1-201ENST00000591692 448 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 AC004832.4-201ENST00000608952 331 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 AC242852.1-201ENST00000612151 96 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 AC244015.1-201ENST00000622301 99 ntBASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.03□□□□□ -2.08
PAAF1Q9BRP4 AC018630.2-201ENST00000534866 2403 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 SNORD27-201ENST00000363981 72 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 RNU6-117P-201ENST00000365415 107 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 MIR520A-201ENST00000384862 85 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 MIR520G-201ENST00000385064 90 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 MTCO2P33-201ENST00000402100 465 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 AL162725.1-201ENST00000435405 301 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 AC091021.1-201ENST00000468051 388 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 RNU7-128P-201ENST00000517247 62 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 IGLV3-17-201ENST00000519099 244 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 AC015720.1-201ENST00000565251 277 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 MIR6079-201ENST00000635807 62 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 U6.108-201ENST00000637764 58 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.02□□□□□ -2.09
PAAF1Q9BRP4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 AC134026.1-201ENST00000623249 2239 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 Y_RNA.188-201ENST00000363952 111 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 Y_RNA.275-201ENST00000364726 110 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 Y_RNA.277-201ENST00000364754 102 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 SNORA20.1-201ENST00000364790 130 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 SNORA6-201ENST00000384033 151 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 RNU6-1289P-201ENST00000384431 106 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 MIR562-201ENST00000384894 95 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 Y_RNA.590-201ENST00000410140 107 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 RNU6-717P-201ENST00000459076 104 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 AC117454.1-201ENST00000491120 168 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 Y_RNA.673-201ENST00000516306 88 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 RNU6-1271P-201ENST00000517049 105 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 RNU6-1096P-201ENST00000517089 102 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 SUB1P4-201ENST00000566062 339 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 MIR3128-201ENST00000581957 66 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 POLR3GP1-201ENST00000594073 261 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 AL162424.1-201ENST00000602325 221 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 AC006006.1-201ENST00000603082 144 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.01□□□□□ -2.09
PAAF1Q9BRP4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 163.8 ms