Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR410-201ENST00000362222 80 ntBASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 Y_RNA.358-201ENST00000365491 99 ntBASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 RNU6-163P-201ENST00000384396 106 ntBASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 SNORD115-47-201ENST00000391226 86 ntBASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 RNU6-1050P-201ENST00000410388 107 ntBASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 RNU2-64P-201ENST00000411315 191 ntBASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 RNU6-720P-201ENST00000516363 108 ntBASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 RNU6-510P-201ENST00000391239 108 ntBASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 MIR548F5-201ENST00000408421 86 ntBASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 RNU5A-5P-201ENST00000411054 116 ntBASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 Y_RNA.621-201ENST00000411065 96 ntBASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 CYCTP-201ENST00000504253 315 ntBASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 SNORA40.9-201ENST00000515895 93 ntBASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 Y_RNA.708-201ENST00000516950 96 ntBASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 RNU6-1116P-201ENST00000517269 99 ntBASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 AC120024.3-201ENST00000603167 156 ntBASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 AC007742.2-201ENST00000618226 398 ntBASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 MIR3688-2-201ENST00000636963 87 ntBASIC0.9□□□□□ -2.27
HDDC3Q8N4P3 Y_RNA.3-201ENST00000362331 103 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 RNU6-874P-201ENST00000362390 105 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 RNU6-1187P-201ENST00000364771 110 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 RNU6-117P-201ENST00000365415 107 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 RNU6-969P-201ENST00000383900 105 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 RNU6-1310P-201ENST00000384153 107 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 RNU6-601P-201ENST00000384540 107 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 RPS3AP1-201ENST00000413190 320 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 AC114482.1-201ENST00000418010 247 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 RPS3AP52-201ENST00000435639 297 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 AC245047.8-201ENST00000456455 284 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 RNU7-90P-201ENST00000459216 62 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 RNU6-329P-201ENST00000459618 107 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 AC092989.1-201ENST00000481235 277 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 MIR1273G-201ENST00000577677 100 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 AC004832.4-201ENST00000608952 331 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 AC008133.2-201ENST00000624540 351 ntBASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.89□□□□□ -2.27
HDDC3Q8N4P3 SNORD68-201ENST00000363214 84 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 RNU6-833P-201ENST00000363486 107 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 SNORD116-13-201ENST00000384408 92 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 RPL23AP50-201ENST00000434149 455 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 Z98949.2-201ENST00000440996 144 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 AC107399.1-201ENST00000451226 265 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 U8.22-201ENST00000459141 133 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 RNU7-21P-201ENST00000459430 62 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 RPS29P25-201ENST00000481709 171 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 PSMC1P5-201ENST00000512850 177 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 RNU6-63P-201ENST00000516690 95 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 AC018638.8-201ENST00000588755 281 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 AL590095.2-201ENST00000604136 117 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 AC108706.1-201ENST00000611053 297 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 PISRT1.1-201ENST00000616930 107 ntBASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.88□□□□□ -2.27
HDDC3Q8N4P3 RNU6-454P-201ENST00000364292 107 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 Y_RNA.516-201ENST00000384541 124 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 MIR526A1-201ENST00000384897 85 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 SNORA75.2-201ENST00000391138 150 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 SNORA75.3-201ENST00000391231 150 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 PIGPP3-201ENST00000425307 415 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 RPEP5-201ENST00000441137 268 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 RPL39P28-201ENST00000465655 155 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 RPS26P48-201ENST00000491713 339 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 AC105313.1-201ENST00000509121 353 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 RNU6-197P-201ENST00000516680 100 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 RNU6-307P-201ENST00000516743 106 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 AC133485.1-201ENST00000567176 124 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 AC138907.6-201ENST00000568401 126 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 MIR4714-201ENST00000580728 77 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 AC005899.2-201ENST00000584353 90 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 AC005828.6-201ENST00000606610 232 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 AC009229.3-201ENST00000608056 282 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 AL096861.1-201ENST00000610899 123 ntBASIC0.87□□□□□ -2.27
HDDC3Q8N4P3 CASC19-280ENST00000642102 1351 ntBASIC0.86□□□□□ -2.27
HDDC3Q8N4P3 Y_RNA.86-201ENST00000363020 111 ntBASIC0.86□□□□□ -2.27
HDDC3Q8N4P3 MIR452-201ENST00000385020 85 ntBASIC0.86□□□□□ -2.27
HDDC3Q8N4P3 MIR548K-201ENST00000408406 116 ntBASIC0.86□□□□□ -2.27
HDDC3Q8N4P3 AC004941.2-201ENST00000427009 228 ntBASIC0.86□□□□□ -2.27
HDDC3Q8N4P3 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.86□□□□□ -2.27
HDDC3Q8N4P3 ELOCP24-201ENST00000456370 334 ntBASIC0.86□□□□□ -2.27
HDDC3Q8N4P3 RPL7P42-201ENST00000481005 679 ntBASIC0.86□□□□□ -2.27
HDDC3Q8N4P3 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.86□□□□□ -2.27
HDDC3Q8N4P3 AL391903.3-201ENST00000612158 163 ntBASIC0.86□□□□□ -2.27
HDDC3Q8N4P3 AC027279.3-201ENST00000625055 122 ntBASIC0.86□□□□□ -2.27
HDDC3Q8N4P3 SNORD114-7-201ENST00000362520 77 ntBASIC0.85□□□□□ -2.27
HDDC3Q8N4P3 Y_RNA.336-201ENST00000365307 109 ntBASIC0.85□□□□□ -2.27
HDDC3Q8N4P3 RNU6-318P-201ENST00000384283 103 ntBASIC0.85□□□□□ -2.27
HDDC3Q8N4P3 MIR608-201ENST00000384820 100 ntBASIC0.85□□□□□ -2.27
HDDC3Q8N4P3 SNORD12B-201ENST00000410433 91 ntBASIC0.85□□□□□ -2.27
HDDC3Q8N4P3 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms