| HOOK3 | Q86VS8 | AC093850.1-201 | ENST00000454121 | 251 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | MTCO3P10-201 | ENST00000455912 | 772 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | ELOCP24-201 | ENST00000456370 | 334 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | PRDX4P1-201 | ENST00000507189 | 574 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORD116-28-201 | ENST00000516123 | 91 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC055872.1-201 | ENST00000570978 | 278 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AL355073.2-201 | ENST00000612106 | 557 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | LINC01068-202 | ENST00000620874 | 626 nt | TSL 3 BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU4-41P-201 | ENST00000364426 | 143 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-136P-201 | ENST00000384663 | 107 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-1054P-201 | ENST00000411293 | 104 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | Z98949.2-201 | ENST00000440996 | 144 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RPL30P15-201 | ENST00000457129 | 321 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC082651.2-201 | ENST00000496833 | 166 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORA31.2-201 | ENST00000516019 | 134 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORA31.4-201 | ENST00000516049 | 129 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | MIR4781-201 | ENST00000585250 | 76 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC006380.1-201 | ENST00000603598 | 186 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AL357312.1-201 | ENST00000603879 | 298 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | CDKN3-212 | ENST00000620759 | 196 nt | TSL 5 BASIC | 1.17 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORA22-201 | ENST00000383907 | 134 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-1297P-201 | ENST00000384415 | 104 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORA22C-201 | ENST00000384614 | 134 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORD78.2-201 | ENST00000391076 | 69 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU2-54P-201 | ENST00000410299 | 190 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | Y_RNA.605-201 | ENST00000410577 | 105 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AL354751.2-201 | ENST00000415471 | 210 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | MRPL35P3-201 | ENST00000421557 | 364 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AL162725.1-201 | ENST00000435405 | 301 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU7-169P-201 | ENST00000459456 | 61 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RPS23P4-201 | ENST00000487908 | 423 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-1337P-201 | ENST00000516525 | 95 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORA70.22-201 | ENST00000517160 | 124 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AL117336.2-201 | ENST00000602435 | 335 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC240442.1-201 | ENST00000616055 | 283 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU1-124P-201 | ENST00000363861 | 145 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AL031003.1-201 | ENST00000404229 | 172 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNA5SP511-201 | ENST00000410487 | 115 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | MRPS18CP6-201 | ENST00000423587 | 223 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-911P-201 | ENST00000516523 | 104 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-1012P-201 | ENST00000516606 | 109 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC025580.2-205 | ENST00000559960 | 552 nt | TSL 4 BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | ZNF518A-210 | ENST00000624776 | 7994 nt | APPRIS P1 TSL 1 (best) BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | Y_RNA.4-201 | ENST00000362333 | 112 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-490P-201 | ENST00000362985 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | Y_RNA.101-201 | ENST00000363154 | 102 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-833P-201 | ENST00000363486 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-392P-201 | ENST00000364926 | 101 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | MIR222-201 | ENST00000384992 | 110 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | CEP57L1P1-201 | ENST00000430943 | 1201 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC099799.1-201 | ENST00000439809 | 192 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC245047.7-201 | ENST00000440265 | 293 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC048334.1-201 | ENST00000477975 | 159 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC093852.1-201 | ENST00000503587 | 266 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | CR383656.11-201 | ENST00000552261 | 498 nt | TSL 3 BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC032019.2-201 | ENST00000584916 | 403 nt | TSL 5 BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC005176.2-201 | ENST00000596933 | 147 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | U2.1-201 | ENST00000618978 | 145 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | C9orf84-204 | ENST00000394777 | 4955 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU4-79P-201 | ENST00000362764 | 141 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNY3P11-201 | ENST00000364153 | 102 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | Y_RNA.314-201 | ENST00000365114 | 102 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | Y_RNA.387-201 | ENST00000383918 | 102 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | MIR559-201 | ENST00000385188 | 96 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | MIR891A-201 | ENST00000401237 | 79 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RPS4XP11-201 | ENST00000446897 | 772 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RPL39P39-201 | ENST00000455840 | 151 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC087343.1-201 | ENST00000477341 | 475 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | HMGN1P7-201 | ENST00000491722 | 313 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC108516.1-201 | ENST00000503666 | 257 nt | TSL 2 BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | CYCTP-201 | ENST00000504253 | 315 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | Y_RNA.676-201 | ENST00000516393 | 96 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC138305.3-201 | ENST00000624988 | 240 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC027279.3-201 | ENST00000625055 | 122 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | Y_RNA.142-201 | ENST00000363491 | 102 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | Y_RNA.259-201 | ENST00000364619 | 101 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-20P-201 | ENST00000384106 | 107 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | MIR628-201 | ENST00000385229 | 95 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-910P-201 | ENST00000390844 | 107 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC104332.1-201 | ENST00000440471 | 797 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-947P-201 | ENST00000516264 | 106 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-277P-201 | ENST00000516272 | 106 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-1116P-201 | ENST00000517269 | 99 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC120024.3-201 | ENST00000603167 | 156 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | AC103810.9-201 | ENST00000606688 | 112 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | OSBPL1A-217 | ENST00000638614 | 84 nt | TSL 5 BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | ZGRF1-202 | ENST00000309071 | 3347 nt | TSL 1 (best) BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | CCDC68-202 | ENST00000432185 | 4014 nt | APPRIS P1 TSL 1 (best) BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-626P-201 | ENST00000363354 | 107 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-1187P-201 | ENST00000364771 | 110 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | Y_RNA.390-201 | ENST00000383932 | 102 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-1080P-201 | ENST00000383982 | 107 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6-1105P-201 | ENST00000384774 | 107 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | SNORD12-201 | ENST00000391002 | 90 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNY4P36-201 | ENST00000391116 | 96 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU6ATAC8P-201 | ENST00000408460 | 126 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | RNU2-61P-201 | ENST00000411069 | 191 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | NCOA7-AS1-201 | ENST00000429007 | 501 nt | TSL 3 BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | MIR4659A-201 | ENST00000580269 | 81 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK3 | Q86VS8 | MTND4LP32-201 | ENST00000636111 | 270 nt | BASIC | 1.11 | □□□□□ -2.23 | | |