Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 RNU4-36P-201ENST00000364294 144 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 RNU6-336P-201ENST00000364891 107 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 Y_RNA.465-201ENST00000384293 102 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 RNU6-480P-201ENST00000384332 107 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 MTCO3P8-201ENST00000453691 755 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 RNU7-73P-201ENST00000458743 63 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 snoU13.16-201ENST00000459350 104 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 AC091959.1-201ENST00000495857 238 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 HSPE1P23-201ENST00000509838 286 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 AC105029.1-201ENST00000520250 669 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 RMST_3.1-201ENST00000611651 109 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 SNORA70.25-201ENST00000612741 95 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 AC023158.2-201ENST00000614876 543 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 AC084368.1-201ENST00000620935 65 ntBASIC-0.61□□□□□ -2.51
CSPG4Q6UVK1 AC073343.1-201ENST00000328239 651 ntBASIC-0.62□□□□□ -2.51
CSPG4Q6UVK1 SNORD45.3-201ENST00000363836 72 ntBASIC-0.62□□□□□ -2.51
CSPG4Q6UVK1 SNORA36A-201ENST00000384221 132 ntBASIC-0.62□□□□□ -2.51
CSPG4Q6UVK1 AL158050.1-201ENST00000416077 457 ntBASIC-0.62□□□□□ -2.51
CSPG4Q6UVK1 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC-0.62□□□□□ -2.51
CSPG4Q6UVK1 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-0.62□□□□□ -2.51
CSPG4Q6UVK1 HIF1AP1-201ENST00000553642 175 ntBASIC-0.62□□□□□ -2.51
CSPG4Q6UVK1 AC121247.2-201ENST00000604776 136 ntBASIC-0.62□□□□□ -2.51
CSPG4Q6UVK1 AC105081.1-201ENST00000617727 106 ntBASIC-0.62□□□□□ -2.51
CSPG4Q6UVK1 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 RNU6-47P-201ENST00000383866 107 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 RNU6-607P-201ENST00000411283 108 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 AC008134.1-201ENST00000420943 193 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 ZNF736P7Y-201ENST00000425158 820 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 MTND3P25-201ENST00000509243 135 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 MTND1P8-201ENST00000571424 950 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 AL359999.1-201ENST00000604513 294 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 MIR4791-201ENST00000607666 84 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 AL445523.1-201ENST00000451184 1362 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 RNU6-428P-201ENST00000362942 107 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 RNU6-190P-201ENST00000384154 102 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 RNU6-541P-201ENST00000384709 110 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 AL353572.1-201ENST00000442490 417 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 SEPT14P24-201ENST00000447236 180 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 RNU2-11P-201ENST00000459191 187 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 AC116353.2-201ENST00000505332 712 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 AC010493.1-201ENST00000513479 292 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 RNU6-1007P-201ENST00000516586 107 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 OR4H6P-202ENST00000603819 340 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 AC091304.10-201ENST00000641554 121 ntBASIC-0.63□□□□□ -2.51
CSPG4Q6UVK1 Y_RNA.174-201ENST00000363781 105 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 RNU6-1048P-201ENST00000364054 107 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 Y_RNA.370-201ENST00000365589 108 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 MIR215-201ENST00000384858 110 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 MIR563-201ENST00000385080 79 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 RNU6-1199P-201ENST00000411249 104 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 AC090616.2-202ENST00000584248 222 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 AC005609.4-201ENST00000625071 447 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 SNORA43.4-201ENST00000629559 138 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 SNORA27.1-201ENST00000362604 124 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 SNORA24-201ENST00000384096 131 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 AC114491.1-201ENST00000416095 246 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 AC004386.2-201ENST00000441858 148 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 MTATP6P14-201ENST00000455189 673 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 SNORA18.4-201ENST00000516440 124 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 SNORA25.17-201ENST00000517184 124 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 PCMTD1P2-201ENST00000565017 355 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 POLR3GP1-201ENST00000594073 261 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 uc_338.11-201ENST00000619132 160 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 AC137590.2-201ENST00000619709 240 ntBASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC-0.64□□□□□ -2.51
CSPG4Q6UVK1 RNU6-1115P-201ENST00000362490 106 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 Y_RNA.150-201ENST00000363562 102 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 RNU6-960P-201ENST00000364056 120 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 RNU6-61P-201ENST00000365528 109 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 RNY3P14-201ENST00000384309 102 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 RNU6-1106P-201ENST00000390845 107 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 RNY4P36-201ENST00000391116 96 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 MTCYBP4-201ENST00000401524 249 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 RNU5A-5P-201ENST00000411054 116 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AL390729.2-201ENST00000416137 156 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AC010655.3-201ENST00000478818 450 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 MTCO3P42-201ENST00000509488 518 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 MTCO3P39-201ENST00000514812 518 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AC069431.2-201ENST00000604149 1099 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AC072039.2-201ENST00000608883 439 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 RNU6-727P-201ENST00000363592 107 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AC010975.2-201ENST00000427781 588 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 MTND4LP7-201ENST00000431728 294 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AL158053.1-201ENST00000441503 453 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 UQCRBP2-201ENST00000447827 297 ntBASIC-0.65□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms