Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SNORA27.1-201ENST00000362604 124 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 SNORD115-3-201ENST00000363100 82 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 Y_RNA.99-201ENST00000363138 105 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 Y_RNA.304-201ENST00000365011 112 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 RNU6-211P-201ENST00000384047 107 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 MIR1262-201ENST00000408276 93 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 MIR548I3-201ENST00000408378 149 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 MIR548I1-201ENST00000408810 149 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 AL135790.2-201ENST00000437701 267 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 Y_RNA.644-201ENST00000459006 113 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 Y_RNA.637-201ENST00000459424 114 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 Y_RNA.674-201ENST00000516362 113 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 RNU6-856P-201ENST00000516959 98 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 AC087441.2-201ENST00000529141 262 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 AL008718.3-201ENST00000610217 321 ntBASIC2.42□□□□□ -2.02
VPS53Q5VIR6 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.42□□□□□ -2.02
VPS53Q5VIR6 MIR340-201ENST00000362125 95 ntBASIC2.41□□□□□ -2.02
VPS53Q5VIR6 RNU6-801P-201ENST00000364087 105 ntBASIC2.41□□□□□ -2.02
VPS53Q5VIR6 Y_RNA.310-201ENST00000365063 113 ntBASIC2.41□□□□□ -2.02
VPS53Q5VIR6 RNU6-1240P-201ENST00000365155 104 ntBASIC2.41□□□□□ -2.02
VPS53Q5VIR6 RNU6-855P-201ENST00000410395 104 ntBASIC2.41□□□□□ -2.02
VPS53Q5VIR6 AC016909.1-201ENST00000415916 166 ntBASIC2.41□□□□□ -2.02
VPS53Q5VIR6 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.41□□□□□ -2.02
VPS53Q5VIR6 HMGN2P38-201ENST00000423806 265 ntBASIC2.41□□□□□ -2.02
VPS53Q5VIR6 BTF3P11-201ENST00000426582 477 ntBASIC2.41□□□□□ -2.02
VPS53Q5VIR6 RPS26P55-201ENST00000471178 356 ntBASIC2.41□□□□□ -2.02
VPS53Q5VIR6 AC002984.1-201ENST00000591692 448 ntBASIC2.41□□□□□ -2.02
VPS53Q5VIR6 AC004792.1-201ENST00000614523 137 ntBASIC2.41□□□□□ -2.02
VPS53Q5VIR6 AC008555.8-201ENST00000623602 2168 ntBASIC2.4□□□□□ -2.02
VPS53Q5VIR6 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
VPS53Q5VIR6 Y_RNA.124-201ENST00000363339 93 ntBASIC2.4□□□□□ -2.03
VPS53Q5VIR6 SNORA16B-201ENST00000364674 135 ntBASIC2.4□□□□□ -2.03
VPS53Q5VIR6 RNA5SP138-201ENST00000365098 114 ntBASIC2.4□□□□□ -2.03
VPS53Q5VIR6 Y_RNA.341-201ENST00000365341 102 ntBASIC2.4□□□□□ -2.03
VPS53Q5VIR6 RNU6-763P-201ENST00000390865 106 ntBASIC2.4□□□□□ -2.03
VPS53Q5VIR6 RNA5SP465-201ENST00000391195 109 ntBASIC2.4□□□□□ -2.03
VPS53Q5VIR6 Y_RNA.793-201ENST00000411222 111 ntBASIC2.4□□□□□ -2.03
VPS53Q5VIR6 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS53Q5VIR6 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
VPS53Q5VIR6 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.4□□□□□ -2.03
VPS53Q5VIR6 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.4□□□□□ -2.03
VPS53Q5VIR6 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
VPS53Q5VIR6 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
VPS53Q5VIR6 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
VPS53Q5VIR6 Y_RNA.262-201ENST00000364641 102 ntBASIC2.39□□□□□ -2.03
VPS53Q5VIR6 Y_RNA.287-201ENST00000364853 94 ntBASIC2.39□□□□□ -2.03
VPS53Q5VIR6 SNORA72.4-201ENST00000384174 132 ntBASIC2.39□□□□□ -2.03
VPS53Q5VIR6 PIGPP3-201ENST00000425307 415 ntBASIC2.39□□□□□ -2.03
VPS53Q5VIR6 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS53Q5VIR6 MIR5692C2-201ENST00000577959 77 ntBASIC2.39□□□□□ -2.03
VPS53Q5VIR6 FTX_2.1-201ENST00000618816 94 ntBASIC2.39□□□□□ -2.03
VPS53Q5VIR6 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.39□□□□□ -2.03
VPS53Q5VIR6 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS53Q5VIR6 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.39□□□□□ -2.03
VPS53Q5VIR6 Y_RNA.555-201ENST00000384673 110 ntBASIC2.38□□□□□ -2.03
VPS53Q5VIR6 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
VPS53Q5VIR6 SNORA26.5-201ENST00000391215 123 ntBASIC2.38□□□□□ -2.03
VPS53Q5VIR6 RNA5SP450-201ENST00000411206 102 ntBASIC2.38□□□□□ -2.03
VPS53Q5VIR6 AC010154.1-201ENST00000425857 269 ntBASIC2.38□□□□□ -2.03
VPS53Q5VIR6 RNU7-120P-201ENST00000459334 63 ntBASIC2.38□□□□□ -2.03
VPS53Q5VIR6 RPL36AP21-201ENST00000490372 323 ntBASIC2.38□□□□□ -2.03
VPS53Q5VIR6 RNA5SP20-201ENST00000515976 84 ntBASIC2.38□□□□□ -2.03
VPS53Q5VIR6 AC024405.2-202ENST00000532731 184 ntBASIC2.38□□□□□ -2.03
VPS53Q5VIR6 AL365265.1-201ENST00000621045 234 ntBASIC2.38□□□□□ -2.03
VPS53Q5VIR6 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.38□□□□□ -2.03
VPS53Q5VIR6 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.38□□□□□ -2.03
VPS53Q5VIR6 CENPCP1-201ENST00000533085 2578 ntBASIC2.38□□□□□ -2.03
VPS53Q5VIR6 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS53Q5VIR6 AL596028.1-201ENST00000326971 197 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 RNU6-653P-201ENST00000363074 106 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 RNU6-1020P-201ENST00000363684 107 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 RNU6-899P-201ENST00000363947 107 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 RNU6-209P-201ENST00000384118 107 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 MIR17-201ENST00000385012 84 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 AL512604.1-201ENST00000404812 257 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 RPS20P10-201ENST00000451209 253 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 RNU1-131P-201ENST00000458943 161 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 U8.19-201ENST00000459095 133 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.37□□□□□ -2.03
VPS53Q5VIR6 RNU6-1337P-201ENST00000516525 95 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.37□□□□□ -2.03
VPS53Q5VIR6 MIR4287-201ENST00000579398 78 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.37□□□□□ -2.03
VPS53Q5VIR6 AC013791.1-201ENST00000616619 62 ntBASIC2.37□□□□□ -2.03
VPS53Q5VIR6 RNU1-58P-201ENST00000362413 163 ntBASIC2.36□□□□□ -2.03
VPS53Q5VIR6 RNU6-407P-201ENST00000365280 104 ntBASIC2.36□□□□□ -2.03
VPS53Q5VIR6 RNU6-160P-201ENST00000384591 107 ntBASIC2.36□□□□□ -2.03
VPS53Q5VIR6 MTND2P29-201ENST00000438595 412 ntBASIC2.36□□□□□ -2.03
VPS53Q5VIR6 AL353689.1-201ENST00000438895 199 ntBASIC2.36□□□□□ -2.03
VPS53Q5VIR6 UBL5P3-201ENST00000475112 231 ntBASIC2.36□□□□□ -2.03
VPS53Q5VIR6 SUMO2P18-201ENST00000518873 252 ntBASIC2.36□□□□□ -2.03
VPS53Q5VIR6 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS53Q5VIR6 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.36□□□□□ -2.03
VPS53Q5VIR6 AP002392.1-201ENST00000537692 208 ntBASIC2.36□□□□□ -2.03
VPS53Q5VIR6 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS53Q5VIR6 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
VPS53Q5VIR6 SNORD114-1-201ENST00000362705 72 ntBASIC2.35□□□□□ -2.03
VPS53Q5VIR6 Y_RNA.435-201ENST00000384095 112 ntBASIC2.35□□□□□ -2.03
VPS53Q5VIR6 RNU11-3P-201ENST00000391111 133 ntBASIC2.35□□□□□ -2.03
VPS53Q5VIR6 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms