Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 RNA5SP48-201ENST00000363969 126 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 SNORD14.1-201ENST00000365609 90 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 RNU6-1145P-201ENST00000384246 107 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 Y_RNA.498-201ENST00000384460 102 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 RNU6-1067P-201ENST00000384752 107 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 RNU6-1105P-201ENST00000384774 107 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 RNU1-119P-201ENST00000391122 165 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 RNA5SP193-201ENST00000410353 107 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 RNU6-994P-201ENST00000410507 111 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 Y_RNA.621-201ENST00000411065 96 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 SUMO1P2-201ENST00000452524 304 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 ELOCP24-201ENST00000456370 334 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 RN7SKP164-201ENST00000516138 266 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 RNU6-273P-201ENST00000516937 96 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 SNORA74.3-201ENST00000517108 154 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 AC018448.1-201ENST00000552843 316 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 Z83818.1-201ENST00000603584 150 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 AC005828.6-201ENST00000606610 232 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 PVT1_3.1-201ENST00000620853 95 ntBASIC0.36□□□□□ -2.35
ZNF404Q494X3 Y_RNA.38-201ENST00000362617 102 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 Y_RNA.48-201ENST00000362710 103 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
ZNF404Q494X3 MIR15B-201ENST00000385045 98 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 RNA5SP475-201ENST00000410568 110 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 AC244098.3-201ENST00000424803 96 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 AC244023.1-201ENST00000426884 112 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 USP9YP30-201ENST00000430729 455 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 RNU1-54P-201ENST00000517181 120 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.35□□□□□ -2.35
ZNF404Q494X3 AC011195.1-201ENST00000578177 177 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.35□□□□□ -2.35
ZNF404Q494X3 AC242498.1-201ENST00000604134 111 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.35□□□□□ -2.35
ZNF404Q494X3 AC243994.1-201ENST00000618627 109 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 MIR3674-201ENST00000636576 68 ntBASIC0.35□□□□□ -2.35
ZNF404Q494X3 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.34□□□□□ -2.35
ZNF404Q494X3 RNU6-879P-201ENST00000364328 108 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 U8.5-201ENST00000364528 136 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 MIR136-201ENST00000385207 82 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 MIR190B-201ENST00000401119 79 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 AL354751.2-201ENST00000415471 210 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.34□□□□□ -2.36
ZNF404Q494X3 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.34□□□□□ -2.36
ZNF404Q494X3 DLGAP5P1-201ENST00000430307 464 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 RNU6-625P-201ENST00000459412 107 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 AC036111.3-201ENST00000526389 112 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.34□□□□□ -2.36
ZNF404Q494X3 MIR4764-201ENST00000580680 88 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 AC243829.6-201ENST00000612652 106 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 AL591926.4-201ENST00000616895 298 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 AL589743.1-201ENST00000551932 2712 ntBASIC0.34□□□□□ -2.36
ZNF404Q494X3 SNORD114-7-201ENST00000362520 77 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 RNU6-454P-201ENST00000364292 107 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 Y_RNA.364-201ENST00000365532 101 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 SNORD116-9-201ENST00000384000 95 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 SNORA50A-201ENST00000384225 134 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 SNORD116-3-201ENST00000384287 95 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 SNORD116-7-201ENST00000384404 95 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 SNORD116-5-201ENST00000384462 95 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 RNU6-1237P-201ENST00000384777 107 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 SNORD111-201ENST00000408139 94 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 RNA5SP222-201ENST00000411039 105 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 UBE2V1P7-201ENST00000446395 340 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 RNU7-87P-201ENST00000459343 62 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 RNU7-43P-201ENST00000516554 64 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 SNORA18.7-201ENST00000516910 131 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 AF235103.2-201ENST00000525753 346 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.33□□□□□ -2.36
ZNF404Q494X3 MIR4762-201ENST00000585261 75 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.33□□□□□ -2.36
ZNF404Q494X3 MIR1321-201ENST00000637766 79 ntBASIC0.33□□□□□ -2.36
ZNF404Q494X3 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
ZNF404Q494X3 SNORA36.2-201ENST00000384004 127 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 RNU6-842P-201ENST00000384269 107 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 RNU6-700P-201ENST00000391043 107 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 RNA5SP511-201ENST00000410487 115 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.32□□□□□ -2.36
ZNF404Q494X3 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.32□□□□□ -2.36
ZNF404Q494X3 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC0.32□□□□□ -2.36
ZNF404Q494X3 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.32□□□□□ -2.36
ZNF404Q494X3 RNU4-57P-201ENST00000515980 135 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 RNU6-864P-201ENST00000516256 108 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 RNU11-2P-201ENST00000516898 142 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 MIR5701-3-201ENST00000578890 82 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 MIR5701-1-201ENST00000585138 82 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 AC245008.1-201ENST00000608123 476 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 MIR6128-201ENST00000615528 109 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 MIR5701-2-201ENST00000615634 82 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 MIR7111-201ENST00000619751 72 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 AC090617.10-201ENST00000624308 134 ntBASIC0.32□□□□□ -2.36
ZNF404Q494X3 Y_RNA.243-201ENST00000364481 109 ntBASIC0.31□□□□□ -2.36
ZNF404Q494X3 VTRNA1-3-201ENST00000365645 89 ntBASIC0.31□□□□□ -2.36
ZNF404Q494X3 AC117470.1-201ENST00000381974 330 ntBASIC0.31□□□□□ -2.36
ZNF404Q494X3 RNU6-342P-201ENST00000384521 104 ntBASIC0.31□□□□□ -2.36
ZNF404Q494X3 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.31□□□□□ -2.36
ZNF404Q494X3 AC093027.1-201ENST00000546698 429 ntBASIC0.31□□□□□ -2.36
ZNF404Q494X3 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.31□□□□□ -2.36
ZNF404Q494X3 MIR3662-201ENST00000637030 95 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms