Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 RNU2-27P-201ENST00000516185 142 ntBASIC3.61□□□□□ -1.83
FOXC1Q12948 MIR338-201ENST00000636369 67 ntBASIC3.61□□□□□ -1.83
FOXC1Q12948 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
FOXC1Q12948 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXC1Q12948 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXC1Q12948 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
FOXC1Q12948 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXC1Q12948 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.6□□□□□ -1.83
FOXC1Q12948 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
FOXC1Q12948 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.6□□□□□ -1.83
FOXC1Q12948 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
FOXC1Q12948 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
FOXC1Q12948 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
FOXC1Q12948 RNU6-1319P-201ENST00000390855 104 ntBASIC3.6□□□□□ -1.83
FOXC1Q12948 RNU6-747P-201ENST00000390928 104 ntBASIC3.6□□□□□ -1.83
FOXC1Q12948 RNU6-241P-201ENST00000391148 104 ntBASIC3.6□□□□□ -1.83
FOXC1Q12948 RNU6-177P-201ENST00000411257 104 ntBASIC3.6□□□□□ -1.83
FOXC1Q12948 AL445685.2-201ENST00000422551 342 ntBASIC3.6□□□□□ -1.83
FOXC1Q12948 MIR6715A-201ENST00000615929 79 ntBASIC3.6□□□□□ -1.83
FOXC1Q12948 AC002076.2-201ENST00000617362 122 ntBASIC3.6□□□□□ -1.83
FOXC1Q12948 MIR7702-201ENST00000621931 59 ntBASIC3.6□□□□□ -1.83
FOXC1Q12948 Y_RNA.788-201ENST00000622394 112 ntBASIC3.6□□□□□ -1.83
FOXC1Q12948 MIR6841-201ENST00000637129 72 ntBASIC3.6□□□□□ -1.83
FOXC1Q12948 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
FOXC1Q12948 AP001486.2-201ENST00000561652 5113 ntBASIC3.59□□□□□ -1.83
FOXC1Q12948 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
FOXC1Q12948 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.59□□□□□ -1.83
FOXC1Q12948 RNU6-1244P-201ENST00000363614 108 ntBASIC3.59□□□□□ -1.83
FOXC1Q12948 RPL31P63-201ENST00000422565 375 ntBASIC3.59□□□□□ -1.83
FOXC1Q12948 AC009969.1-201ENST00000438726 172 ntBASIC3.59□□□□□ -1.83
FOXC1Q12948 AL135938.1-201ENST00000443141 297 ntBASIC3.59□□□□□ -1.83
FOXC1Q12948 MIR4325-201ENST00000583049 90 ntBASIC3.59□□□□□ -1.83
FOXC1Q12948 AL162274.2-201ENST00000614406 332 ntBASIC3.59□□□□□ -1.83
FOXC1Q12948 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
FOXC1Q12948 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXC1Q12948 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXC1Q12948 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXC1Q12948 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXC1Q12948 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXC1Q12948 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-34-201ENST00000362441 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 RNA5SP432-201ENST00000362480 116 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD9-201ENST00000362566 104 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-12-201ENST00000362583 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-29-201ENST00000362834 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-9-201ENST00000362912 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-21-201ENST00000362963 81 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-14-201ENST00000363090 81 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-41-201ENST00000363608 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-11-201ENST00000363616 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-5-201ENST00000363633 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-39-201ENST00000363694 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-4-201ENST00000363810 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD38.1-201ENST00000363863 68 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-6-201ENST00000363942 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-42-201ENST00000364273 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-15-201ENST00000364809 81 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-26-201ENST00000365067 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-10-201ENST00000365073 81 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 RNA5SP167-201ENST00000365461 116 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-43-201ENST00000365503 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORD115-36-201ENST00000365629 82 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 RN7SKP167-201ENST00000411047 285 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXC1Q12948 CYCSP4-201ENST00000429682 331 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 PHBP14-201ENST00000512887 367 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 RNA5SP33-201ENST00000516687 98 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 SNORA31.21-201ENST00000517180 77 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 AL353149.1-201ENST00000610667 244 ntBASIC3.58□□□□□ -1.84
FOXC1Q12948 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
FOXC1Q12948 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC3.58□□□□□ -1.84
FOXC1Q12948 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXC1Q12948 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXC1Q12948 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.57□□□□□ -1.84
FOXC1Q12948 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.57□□□□□ -1.84
FOXC1Q12948 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXC1Q12948 RNA5SP502-201ENST00000362694 119 ntBASIC3.57□□□□□ -1.84
FOXC1Q12948 RNU6-478P-201ENST00000363904 110 ntBASIC3.57□□□□□ -1.84
FOXC1Q12948 Y_RNA.241-201ENST00000364470 117 ntBASIC3.57□□□□□ -1.84
FOXC1Q12948 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
FOXC1Q12948 MIR1265-201ENST00000408444 86 ntBASIC3.57□□□□□ -1.84
FOXC1Q12948 RNU7-45P-201ENST00000459460 63 ntBASIC3.57□□□□□ -1.84
FOXC1Q12948 RNU1-142P-201ENST00000516682 145 ntBASIC3.57□□□□□ -1.84
FOXC1Q12948 AC103810.6-201ENST00000606708 136 ntBASIC3.57□□□□□ -1.84
FOXC1Q12948 MIR8069-1-201ENST00000616627 86 ntBASIC3.57□□□□□ -1.84
FOXC1Q12948 AL591424.2-201ENST00000617023 128 ntBASIC3.57□□□□□ -1.84
FOXC1Q12948 MIR8069-2-201ENST00000621412 86 ntBASIC3.57□□□□□ -1.84
FOXC1Q12948 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.57□□□□□ -1.84
FOXC1Q12948 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
FOXC1Q12948 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.56□□□□□ -1.84
FOXC1Q12948 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
FOXC1Q12948 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXC1Q12948 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXC1Q12948 RNU7-94P-201ENST00000459576 63 ntBASIC3.56□□□□□ -1.84
FOXC1Q12948 RPPH1-2P-201ENST00000516688 293 ntBASIC3.56□□□□□ -1.84
FOXC1Q12948 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.56□□□□□ -1.84
FOXC1Q12948 MIR7112-201ENST00000616126 65 ntBASIC3.56□□□□□ -1.84
FOXC1Q12948 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXC1Q12948 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXC1Q12948 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms