Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 Y_RNA.498-201ENST00000384460 102 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 Y_RNA.573-201ENST00000384763 105 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 MIR200A-201ENST00000384875 90 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 MIR526A1-201ENST00000384897 85 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 MIR942-201ENST00000401111 86 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 Y_RNA.594-201ENST00000410373 140 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 RNU6-733P-201ENST00000410759 104 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.55□□□□□ -2.32
FOXA1P55317 Z98949.2-201ENST00000440996 144 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 AC233266.1-201ENST00000454518 96 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 AL049830.1-201ENST00000468034 425 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 PSMC1P5-201ENST00000512850 177 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 AC090142.3-201ENST00000519012 385 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.55□□□□□ -2.32
FOXA1P55317 EIF1P4-201ENST00000572664 335 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 AC004832.4-201ENST00000608952 331 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 AL096861.1-201ENST00000610899 123 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 AC242852.1-201ENST00000612151 96 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 AC244015.1-201ENST00000622301 99 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 AC127459.3-201ENST00000624328 466 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
FOXA1P55317 MIR410-201ENST00000362222 80 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 Y_RNA.2-201ENST00000362330 96 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 Y_RNA.3-201ENST00000362331 103 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 RNY1P16-201ENST00000363063 111 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 Y_RNA.453-201ENST00000384223 109 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 RNU6-136P-201ENST00000384663 107 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 MIR520G-201ENST00000385064 90 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 MIR873-201ENST00000401120 77 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 AC074085.1-201ENST00000413598 418 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.54□□□□□ -2.32
FOXA1P55317 MTCYBP10-201ENST00000424905 650 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 AL353997.1-201ENST00000432936 108 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 LINC01399-202ENST00000458450 244 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 snoU13.25-201ENST00000458945 104 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 RNU6-625P-201ENST00000459412 107 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 RNU6-720P-201ENST00000516363 108 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 RNU6-1016P-201ENST00000516689 94 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 RNU6-63P-201ENST00000516690 95 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 RNU6-1096P-201ENST00000517089 102 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 AC005828.6-201ENST00000606610 232 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 MIR3674-201ENST00000636576 68 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 MIR3688-2-201ENST00000636963 87 ntBASIC0.54□□□□□ -2.32
FOXA1P55317 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.54□□□□□ -2.32
FOXA1P55317 RNU6-833P-201ENST00000363486 107 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 Y_RNA.358-201ENST00000365491 99 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 RNU6-318P-201ENST00000384283 103 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 SNORA75.2-201ENST00000391138 150 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 SNORD115-47-201ENST00000391226 86 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 SNORA75.3-201ENST00000391231 150 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 MIR936-201ENST00000401264 98 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 RNU6-1050P-201ENST00000410388 107 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 RNA5SP475-201ENST00000410568 110 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 UBE2V1P7-201ENST00000446395 340 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 AL157398.1-201ENST00000452981 186 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 RNU7-21P-201ENST00000459430 62 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 RNU6-329P-201ENST00000459618 107 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.53□□□□□ -2.32
FOXA1P55317 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.53□□□□□ -2.32
FOXA1P55317 SNORD111.1-201ENST00000516421 86 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 RNU6-197P-201ENST00000516680 100 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 AC022868.1-201ENST00000517767 391 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 AL358944.1-201ENST00000528537 144 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.53□□□□□ -2.32
FOXA1P55317 PRELID3BP2-201ENST00000605362 201 ntBASIC0.53□□□□□ -2.32
FOXA1P55317 RNA5SP499-201ENST00000363982 119 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 SNORD116-13-201ENST00000384408 92 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 Y_RNA.516-201ENST00000384541 124 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 MIR891A-201ENST00000401237 79 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 MIR548F5-201ENST00000408421 86 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 RPS3AP1-201ENST00000413190 320 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.52□□□□□ -2.33
FOXA1P55317 AL589823.1-201ENST00000429577 183 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 RPS3AP52-201ENST00000435639 297 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.52□□□□□ -2.33
FOXA1P55317 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.52□□□□□ -2.33
FOXA1P55317 MTATP6P26-201ENST00000445926 662 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.52□□□□□ -2.33
FOXA1P55317 AC245047.8-201ENST00000456455 284 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 RNU7-90P-201ENST00000459216 62 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 SNORA40.9-201ENST00000515895 93 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 AC136628.3-201ENST00000521868 290 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.52□□□□□ -2.33
FOXA1P55317 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.52□□□□□ -2.33
FOXA1P55317 MIR3192-201ENST00000584920 77 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 AL391903.3-201ENST00000612158 163 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 U4.5-201ENST00000617137 123 ntBASIC0.52□□□□□ -2.33
FOXA1P55317 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
FOXA1P55317 RNU6-623P-201ENST00000363143 105 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 RNU6-593P-201ENST00000364716 112 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 Y_RNA.336-201ENST00000365307 109 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 RNU6-163P-201ENST00000384396 106 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 MIR608-201ENST00000384820 100 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 MIR548K-201ENST00000408406 116 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 PIGPP3-201ENST00000425307 415 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 AC092423.1-201ENST00000430165 186 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 AL442644.1-201ENST00000454390 3105 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 RPL7P42-201ENST00000481005 679 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 AC092989.1-201ENST00000481235 277 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms