Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.89□□□□□ -2.11
CTCFP49711 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CTCFP49711 SNORA27.1-201ENST00000362604 124 ntBASIC1.88□□□□□ -2.11
CTCFP49711 RNU1-22P-201ENST00000363334 158 ntBASIC1.88□□□□□ -2.11
CTCFP49711 SNORA22B-201ENST00000383876 138 ntBASIC1.88□□□□□ -2.11
CTCFP49711 RNY1P4-201ENST00000384595 115 ntBASIC1.88□□□□□ -2.11
CTCFP49711 MIR30A-201ENST00000385092 71 ntBASIC1.88□□□□□ -2.11
CTCFP49711 MIR548J-201ENST00000408833 112 ntBASIC1.88□□□□□ -2.11
CTCFP49711 AC005002.2-201ENST00000438228 269 ntBASIC1.88□□□□□ -2.11
CTCFP49711 RPEP5-201ENST00000441137 268 ntBASIC1.88□□□□□ -2.11
CTCFP49711 AC069257.2-201ENST00000441819 155 ntBASIC1.88□□□□□ -2.11
CTCFP49711 RPS27P22-201ENST00000478056 241 ntBASIC1.88□□□□□ -2.11
CTCFP49711 RNU6-966P-201ENST00000516479 104 ntBASIC1.88□□□□□ -2.11
CTCFP49711 MIR4423-201ENST00000580922 80 ntBASIC1.88□□□□□ -2.11
CTCFP49711 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.88□□□□□ -2.11
CTCFP49711 MIR3171-201ENST00000584270 74 ntBASIC1.88□□□□□ -2.11
CTCFP49711 AL390123.1-201ENST00000603216 237 ntBASIC1.88□□□□□ -2.11
CTCFP49711 SNORD115-30-201ENST00000364117 82 ntBASIC1.87□□□□□ -2.11
CTCFP49711 Y_RNA.230-201ENST00000364348 109 ntBASIC1.87□□□□□ -2.11
CTCFP49711 SNORD14.1-201ENST00000365609 90 ntBASIC1.87□□□□□ -2.11
CTCFP49711 Y_RNA.526-201ENST00000384572 110 ntBASIC1.87□□□□□ -2.11
CTCFP49711 RNA5SP323-201ENST00000391094 133 ntBASIC1.87□□□□□ -2.11
CTCFP49711 RNU6-1186P-201ENST00000410429 97 ntBASIC1.87□□□□□ -2.11
CTCFP49711 RNU6-1199P-201ENST00000411249 104 ntBASIC1.87□□□□□ -2.11
CTCFP49711 EBAG9P1-201ENST00000418955 543 ntBASIC1.87□□□□□ -2.11
CTCFP49711 MTCYBP6-201ENST00000441810 138 ntBASIC1.87□□□□□ -2.11
CTCFP49711 RPS27P1-201ENST00000450552 247 ntBASIC1.87□□□□□ -2.11
CTCFP49711 RNU1-142P-201ENST00000516682 145 ntBASIC1.87□□□□□ -2.11
CTCFP49711 AC024614.2-201ENST00000577584 372 ntBASIC1.87□□□□□ -2.11
CTCFP49711 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
CTCFP49711 Y_RNA.124-201ENST00000363339 93 ntBASIC1.86□□□□□ -2.11
CTCFP49711 Y_RNA.216-201ENST00000364205 93 ntBASIC1.86□□□□□ -2.11
CTCFP49711 RNU6-439P-201ENST00000384188 106 ntBASIC1.86□□□□□ -2.11
CTCFP49711 MIR873-201ENST00000401120 77 ntBASIC1.86□□□□□ -2.11
CTCFP49711 RNU2-54P-201ENST00000410299 190 ntBASIC1.86□□□□□ -2.11
CTCFP49711 HSPE1P9-201ENST00000440046 311 ntBASIC1.86□□□□□ -2.11
CTCFP49711 AL606517.2-201ENST00000442855 241 ntBASIC1.86□□□□□ -2.11
CTCFP49711 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.86□□□□□ -2.11
CTCFP49711 SUMO1P2-201ENST00000452524 304 ntBASIC1.86□□□□□ -2.11
CTCFP49711 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.86□□□□□ -2.11
CTCFP49711 AC097462.1-201ENST00000514125 324 ntBASIC1.86□□□□□ -2.11
CTCFP49711 RNU7-99P-201ENST00000516271 62 ntBASIC1.86□□□□□ -2.11
CTCFP49711 Y_RNA.681-201ENST00000516445 113 ntBASIC1.86□□□□□ -2.11
CTCFP49711 RNU6-988P-201ENST00000519081 107 ntBASIC1.86□□□□□ -2.11
CTCFP49711 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.86□□□□□ -2.11
CTCFP49711 MIR4419B-201ENST00000577260 68 ntBASIC1.86□□□□□ -2.11
CTCFP49711 AC104695.3-201ENST00000604052 296 ntBASIC1.86□□□□□ -2.11
CTCFP49711 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.86□□□□□ -2.11
CTCFP49711 AL021879.1-201ENST00000611756 288 ntBASIC1.86□□□□□ -2.11
CTCFP49711 PART1_1.1-201ENST00000611761 217 ntBASIC1.86□□□□□ -2.11
CTCFP49711 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CTCFP49711 RNU4-50P-201ENST00000364361 141 ntBASIC1.85□□□□□ -2.11
CTCFP49711 RNU4-76P-201ENST00000364509 141 ntBASIC1.85□□□□□ -2.11
CTCFP49711 Y_RNA.570-201ENST00000384750 101 ntBASIC1.85□□□□□ -2.11
CTCFP49711 MIR517C-201ENST00000385103 95 ntBASIC1.85□□□□□ -2.11
CTCFP49711 RNU6-130P-201ENST00000411112 103 ntBASIC1.85□□□□□ -2.11
CTCFP49711 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.85□□□□□ -2.11
CTCFP49711 AC073910.1-201ENST00000445047 438 ntBASIC1.85□□□□□ -2.11
CTCFP49711 RNA5SP20-201ENST00000515976 84 ntBASIC1.85□□□□□ -2.11
CTCFP49711 RNU6-1153P-201ENST00000516760 105 ntBASIC1.85□□□□□ -2.11
CTCFP49711 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.85□□□□□ -2.11
CTCFP49711 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.85□□□□□ -2.11
CTCFP49711 AC022217.4-201ENST00000604389 163 ntBASIC1.85□□□□□ -2.11
CTCFP49711 AC022441.3-201ENST00000605737 136 ntBASIC1.85□□□□□ -2.11
CTCFP49711 Y_RNA.772-201ENST00000606692 102 ntBASIC1.85□□□□□ -2.11
CTCFP49711 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CTCFP49711 MIR126-201ENST00000362291 85 ntBASIC1.84□□□□□ -2.11
CTCFP49711 SNORD114-7-201ENST00000362520 77 ntBASIC1.84□□□□□ -2.11
CTCFP49711 RNU6-271P-201ENST00000363858 105 ntBASIC1.84□□□□□ -2.11
CTCFP49711 RNU6-407P-201ENST00000365280 104 ntBASIC1.84□□□□□ -2.11
CTCFP49711 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.84□□□□□ -2.11
CTCFP49711 Y_RNA.446-201ENST00000384178 104 ntBASIC1.84□□□□□ -2.11
CTCFP49711 Y_RNA.471-201ENST00000384312 102 ntBASIC1.84□□□□□ -2.11
CTCFP49711 RNA5SP109-201ENST00000391010 116 ntBASIC1.84□□□□□ -2.11
CTCFP49711 MRPL42P3-201ENST00000401492 326 ntBASIC1.84□□□□□ -2.11
CTCFP49711 RNU2-7P-201ENST00000410794 178 ntBASIC1.84□□□□□ -2.11
CTCFP49711 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.84□□□□□ -2.11
CTCFP49711 U8.20-201ENST00000459445 131 ntBASIC1.84□□□□□ -2.11
CTCFP49711 RNU6-970P-201ENST00000516312 107 ntBASIC1.84□□□□□ -2.11
CTCFP49711 SNORA31.24-201ENST00000517232 57 ntBASIC1.84□□□□□ -2.11
CTCFP49711 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.84□□□□□ -2.11
CTCFP49711 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
CTCFP49711 RNA5SP363-201ENST00000365072 115 ntBASIC1.83□□□□□ -2.12
CTCFP49711 SNORA4.2-201ENST00000365313 147 ntBASIC1.83□□□□□ -2.12
CTCFP49711 Y_RNA.424-201ENST00000384063 103 ntBASIC1.83□□□□□ -2.12
CTCFP49711 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
CTCFP49711 RNU6-823P-201ENST00000391042 103 ntBASIC1.83□□□□□ -2.12
CTCFP49711 AL354695.1-201ENST00000427935 228 ntBASIC1.83□□□□□ -2.12
CTCFP49711 FTH1P12-201ENST00000432137 551 ntBASIC1.83□□□□□ -2.12
CTCFP49711 RNU1-98P-201ENST00000458992 160 ntBASIC1.83□□□□□ -2.12
CTCFP49711 RPS26P55-201ENST00000471178 356 ntBASIC1.83□□□□□ -2.12
CTCFP49711 AC025465.3-201ENST00000510570 311 ntBASIC1.83□□□□□ -2.12
CTCFP49711 RNA5SP481-201ENST00000516814 122 ntBASIC1.83□□□□□ -2.12
CTCFP49711 RNU7-172P-201ENST00000517125 64 ntBASIC1.83□□□□□ -2.12
CTCFP49711 AC044792.1-201ENST00000593294 196 ntBASIC1.83□□□□□ -2.12
CTCFP49711 AC124312.5-201ENST00000604451 268 ntBASIC1.83□□□□□ -2.12
CTCFP49711 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
CTCFP49711 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.82□□□□□ -2.12
CTCFP49711 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.82□□□□□ -2.12
CTCFP49711 RNU6-450P-201ENST00000364654 107 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms