Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU6-318P-201ENST00000384283 103 ntBASIC0.78□□□□□ -2.28
RFX3P48380 Y_RNA.473-201ENST00000384333 102 ntBASIC0.78□□□□□ -2.28
RFX3P48380 AC092423.1-201ENST00000430165 186 ntBASIC0.78□□□□□ -2.28
RFX3P48380 AL353997.1-201ENST00000432936 108 ntBASIC0.78□□□□□ -2.28
RFX3P48380 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.78□□□□□ -2.28
RFX3P48380 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.78□□□□□ -2.28
RFX3P48380 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.78□□□□□ -2.28
RFX3P48380 AC093850.1-201ENST00000454121 251 ntBASIC0.78□□□□□ -2.28
RFX3P48380 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.78□□□□□ -2.28
RFX3P48380 Y_RNA.655-201ENST00000515919 96 ntBASIC0.78□□□□□ -2.28
RFX3P48380 AC060780.3-201ENST00000589464 80 ntBASIC0.78□□□□□ -2.28
RFX3P48380 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.78□□□□□ -2.28
RFX3P48380 AC005592.1-201ENST00000566527 1640 ntBASIC0.78□□□□□ -2.29
RFX3P48380 RNU6-454P-201ENST00000364292 107 ntBASIC0.77□□□□□ -2.29
RFX3P48380 RNU6-969P-201ENST00000383900 105 ntBASIC0.77□□□□□ -2.29
RFX3P48380 SNORA80D-201ENST00000384488 135 ntBASIC0.77□□□□□ -2.29
RFX3P48380 MIR200A-201ENST00000384875 90 ntBASIC0.77□□□□□ -2.29
RFX3P48380 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.77□□□□□ -2.29
RFX3P48380 MIR548J-201ENST00000408833 112 ntBASIC0.77□□□□□ -2.29
RFX3P48380 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.77□□□□□ -2.29
RFX3P48380 AC006461.1-201ENST00000412637 326 ntBASIC0.77□□□□□ -2.29
RFX3P48380 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.77□□□□□ -2.29
RFX3P48380 MTND3P10-201ENST00000450967 341 ntBASIC0.77□□□□□ -2.29
RFX3P48380 U8.22-201ENST00000459141 133 ntBASIC0.77□□□□□ -2.29
RFX3P48380 PDCD5P2-201ENST00000507570 312 ntBASIC0.77□□□□□ -2.29
RFX3P48380 SNORA70.12-201ENST00000516084 153 ntBASIC0.77□□□□□ -2.29
RFX3P48380 RNU6-358P-201ENST00000516564 75 ntBASIC0.77□□□□□ -2.29
RFX3P48380 RNU6-1291P-201ENST00000516591 104 ntBASIC0.77□□□□□ -2.29
RFX3P48380 FAM71BP1-201ENST00000604431 523 ntBASIC0.77□□□□□ -2.29
RFX3P48380 AC106800.4-201ENST00000614905 153 ntBASIC0.77□□□□□ -2.29
RFX3P48380 AC027279.3-201ENST00000625055 122 ntBASIC0.77□□□□□ -2.29
RFX3P48380 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
RFX3P48380 RNU6-1301P-201ENST00000362724 104 ntBASIC0.76□□□□□ -2.29
RFX3P48380 Y_RNA.88-201ENST00000363029 99 ntBASIC0.76□□□□□ -2.29
RFX3P48380 RNY1-201ENST00000364228 113 ntBASIC0.76□□□□□ -2.29
RFX3P48380 Y_RNA.354-201ENST00000365448 111 ntBASIC0.76□□□□□ -2.29
RFX3P48380 Y_RNA.361-201ENST00000365515 120 ntBASIC0.76□□□□□ -2.29
RFX3P48380 MIR613-201ENST00000385248 95 ntBASIC0.76□□□□□ -2.29
RFX3P48380 MIR891A-201ENST00000401237 79 ntBASIC0.76□□□□□ -2.29
RFX3P48380 SNORD12B-201ENST00000410433 91 ntBASIC0.76□□□□□ -2.29
RFX3P48380 LINC01399-202ENST00000458450 244 ntBASIC0.76□□□□□ -2.29
RFX3P48380 RPL7P42-201ENST00000481005 679 ntBASIC0.76□□□□□ -2.29
RFX3P48380 CYCTP-201ENST00000504253 315 ntBASIC0.76□□□□□ -2.29
RFX3P48380 RNU6-351P-201ENST00000516097 100 ntBASIC0.76□□□□□ -2.29
RFX3P48380 RNU6-197P-201ENST00000516680 100 ntBASIC0.76□□□□□ -2.29
RFX3P48380 RNU6-1096P-201ENST00000517089 102 ntBASIC0.76□□□□□ -2.29
RFX3P48380 AP002001.1-203ENST00000534002 267 ntBASIC0.76□□□□□ -2.29
RFX3P48380 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.76□□□□□ -2.29
RFX3P48380 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.76□□□□□ -2.29
RFX3P48380 AC004832.4-201ENST00000608952 331 ntBASIC0.76□□□□□ -2.29
RFX3P48380 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
RFX3P48380 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.76□□□□□ -2.29
RFX3P48380 AC008163.1-202ENST00000636004 2889 ntBASIC0.75□□□□□ -2.29
RFX3P48380 Y_RNA.112-201ENST00000363250 102 ntBASIC0.75□□□□□ -2.29
RFX3P48380 RNU4-41P-201ENST00000364426 143 ntBASIC0.75□□□□□ -2.29
RFX3P48380 MIR100-201ENST00000385259 80 ntBASIC0.75□□□□□ -2.29
RFX3P48380 SNORA75.4-201ENST00000391278 119 ntBASIC0.75□□□□□ -2.29
RFX3P48380 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.75□□□□□ -2.29
RFX3P48380 FCF1P9-201ENST00000412546 282 ntBASIC0.75□□□□□ -2.29
RFX3P48380 RPL23AP50-201ENST00000434149 455 ntBASIC0.75□□□□□ -2.29
RFX3P48380 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.75□□□□□ -2.29
RFX3P48380 Z98949.2-201ENST00000440996 144 ntBASIC0.75□□□□□ -2.29
RFX3P48380 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.75□□□□□ -2.29
RFX3P48380 AC233266.1-201ENST00000454518 96 ntBASIC0.75□□□□□ -2.29
RFX3P48380 MIR2053-201ENST00000459295 91 ntBASIC0.75□□□□□ -2.29
RFX3P48380 PSMC1P5-201ENST00000512850 177 ntBASIC0.75□□□□□ -2.29
RFX3P48380 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.75□□□□□ -2.29
RFX3P48380 AL117336.2-201ENST00000602435 335 ntBASIC0.75□□□□□ -2.29
RFX3P48380 AC242852.1-201ENST00000612151 96 ntBASIC0.75□□□□□ -2.29
RFX3P48380 AC244015.1-201ENST00000622301 99 ntBASIC0.75□□□□□ -2.29
RFX3P48380 MIR6866-201ENST00000638146 69 ntBASIC0.75□□□□□ -2.29
RFX3P48380 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
RFX3P48380 MIR373-201ENST00000362273 69 ntBASIC0.74□□□□□ -2.29
RFX3P48380 Y_RNA.404-201ENST00000383978 102 ntBASIC0.74□□□□□ -2.29
RFX3P48380 RNU6-1105P-201ENST00000384774 107 ntBASIC0.74□□□□□ -2.29
RFX3P48380 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.74□□□□□ -2.29
RFX3P48380 FGF7P6-202ENST00000451282 293 ntBASIC0.74□□□□□ -2.29
RFX3P48380 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.74□□□□□ -2.29
RFX3P48380 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.74□□□□□ -2.29
RFX3P48380 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.74□□□□□ -2.29
RFX3P48380 AC120024.3-201ENST00000603167 156 ntBASIC0.74□□□□□ -2.29
RFX3P48380 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
RFX3P48380 AL442644.1-201ENST00000454390 3105 ntBASIC0.73□□□□□ -2.29
RFX3P48380 Y_RNA.577-201ENST00000384794 101 ntBASIC0.73□□□□□ -2.29
RFX3P48380 MIR608-201ENST00000384820 100 ntBASIC0.73□□□□□ -2.29
RFX3P48380 MIR625-201ENST00000385047 85 ntBASIC0.73□□□□□ -2.29
RFX3P48380 MIR146A-201ENST00000385201 99 ntBASIC0.73□□□□□ -2.29
RFX3P48380 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
RFX3P48380 RNU2-64P-201ENST00000411315 191 ntBASIC0.73□□□□□ -2.29
RFX3P48380 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.73□□□□□ -2.29
RFX3P48380 MTND4P28-201ENST00000426217 387 ntBASIC0.73□□□□□ -2.29
RFX3P48380 AC004941.2-201ENST00000427009 228 ntBASIC0.73□□□□□ -2.29
RFX3P48380 AL162725.1-201ENST00000435405 301 ntBASIC0.73□□□□□ -2.29
RFX3P48380 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.73□□□□□ -2.29
RFX3P48380 AC104332.1-201ENST00000440471 797 ntBASIC0.73□□□□□ -2.29
RFX3P48380 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.73□□□□□ -2.29
RFX3P48380 ELOCP24-201ENST00000456370 334 ntBASIC0.73□□□□□ -2.29
RFX3P48380 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.73□□□□□ -2.29
RFX3P48380 RNU2-12P-201ENST00000517216 168 ntBASIC0.73□□□□□ -2.29
RFX3P48380 AC090142.3-201ENST00000519012 385 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms