Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CASC19-280ENST00000642102 1351 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 SNORA1B-201ENST00000362535 133 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 Y_RNA.124-201ENST00000363339 93 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 Y_RNA.160-201ENST00000363677 92 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 Y_RNA.265-201ENST00000364677 108 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 RNU6-376P-201ENST00000384731 106 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 U8.16-201ENST00000391279 133 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 RNA5SP475-201ENST00000410568 110 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 RAB28P5-201ENST00000427490 651 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 AL137792.2-201ENST00000443484 235 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 AC093850.1-201ENST00000454121 251 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 RPL17P19-201ENST00000489069 552 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 OR9P1P-201ENST00000496431 281 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.81□□□□□ -2.28
CXCL12P48061 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.81□□□□□ -2.28
CXCL12P48061 RNU6-1291P-201ENST00000516591 104 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 MTND4LP26-201ENST00000518144 282 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.81□□□□□ -2.28
CXCL12P48061 SNORA28-201ENST00000606769 126 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 AC012676.2-201ENST00000619258 186 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 MIR3674-201ENST00000636576 68 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 AL669831.3-213ENST00000636676 183 ntBASIC0.81□□□□□ -2.28
CXCL12P48061 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
CXCL12P48061 MIR410-201ENST00000362222 80 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 RNU6-845P-201ENST00000362578 103 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 RNU6-1301P-201ENST00000362724 104 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 SNORD114-23-201ENST00000363536 72 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 RNU6-1187P-201ENST00000364771 110 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 RNU6-424P-201ENST00000384367 105 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 RNU6-136P-201ENST00000384663 107 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.8□□□□□ -2.28
CXCL12P48061 RNU2-56P-201ENST00000516826 190 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 RNU6-341P-201ENST00000516973 96 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.8□□□□□ -2.28
CXCL12P48061 MIR3684-201ENST00000579779 74 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 AC005899.2-201ENST00000584353 90 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 AC080078.2-201ENST00000603766 501 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 AL513534.2-201ENST00000603836 250 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 AC103810.9-201ENST00000606688 112 ntBASIC0.8□□□□□ -2.28
CXCL12P48061 RNU6-199P-201ENST00000362954 107 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 RNA5SP457-201ENST00000363657 124 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 Y_RNA.279-201ENST00000364763 95 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 RNU6-117P-201ENST00000365415 107 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 MIR508-201ENST00000384857 115 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 SNORD41-201ENST00000386967 70 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 MIR873-201ENST00000401120 77 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 SNORD12B-201ENST00000410433 91 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 RNU6-1304P-201ENST00000411374 106 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 PDCL2P1-201ENST00000419302 352 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 MIR2053-201ENST00000459295 91 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 UBL5P1-201ENST00000507979 193 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 RNU6-917P-201ENST00000516294 104 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 RNU6-63P-201ENST00000516690 95 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 RNA5SP404-201ENST00000517118 132 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 AC136932.1-201ENST00000574771 208 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 AL022345.2-201ENST00000606307 135 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 AC005828.6-201ENST00000606610 232 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 AC127459.3-201ENST00000624328 466 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 AC010487.4-201ENST00000637027 61 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 MIR6866-201ENST00000638146 69 ntBASIC0.79□□□□□ -2.28
CXCL12P48061 Y_RNA.248-201ENST00000364501 109 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 SNORA25-201ENST00000384384 134 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 RNU6-876P-201ENST00000391295 104 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 Y_RNA.646-201ENST00000410980 101 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 RNU6-370P-201ENST00000411008 104 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 RNU5A-5P-201ENST00000411054 116 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 AC114482.1-201ENST00000418010 247 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.78□□□□□ -2.28
CXCL12P48061 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.78□□□□□ -2.28
CXCL12P48061 AC233266.1-201ENST00000454518 96 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.78□□□□□ -2.28
CXCL12P48061 RNU6-408P-201ENST00000515910 100 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 Y_RNA.691-201ENST00000516611 103 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 RNU6-307P-201ENST00000516743 106 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 AP002004.2-201ENST00000531656 154 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.78□□□□□ -2.28
CXCL12P48061 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
CXCL12P48061 BX284668.6-201ENST00000606899 438 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 GHRLOS.1-201ENST00000610995 70 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 AC242852.1-201ENST00000612151 96 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.78□□□□□ -2.28
CXCL12P48061 AC087588.2-201ENST00000617667 426 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 AC244015.1-201ENST00000622301 99 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 AC027335.2-201ENST00000624030 375 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 AC098679.4-201ENST00000624241 654 ntBASIC0.78□□□□□ -2.28
CXCL12P48061 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
CXCL12P48061 MIRLET7C-201ENST00000362160 84 ntBASIC0.77□□□□□ -2.29
CXCL12P48061 RNU6-961P-201ENST00000363893 105 ntBASIC0.77□□□□□ -2.29
CXCL12P48061 Y_RNA.243-201ENST00000364481 109 ntBASIC0.77□□□□□ -2.29
CXCL12P48061 RNU6-926P-201ENST00000384075 107 ntBASIC0.77□□□□□ -2.29
CXCL12P48061 MIR653-201ENST00000385279 96 ntBASIC0.77□□□□□ -2.29
CXCL12P48061 MT-TL1-201ENST00000386347 75 ntBASIC0.77□□□□□ -2.29
CXCL12P48061 Y_RNA.619-201ENST00000410951 90 ntBASIC0.77□□□□□ -2.29
CXCL12P48061 AC048334.1-201ENST00000477975 159 ntBASIC0.77□□□□□ -2.29
CXCL12P48061 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.77□□□□□ -2.29
CXCL12P48061 AC105758.1-201ENST00000506038 399 ntBASIC0.77□□□□□ -2.29
CXCL12P48061 SNORA31.2-201ENST00000516019 134 ntBASIC0.77□□□□□ -2.29
CXCL12P48061 RNU7-12P-201ENST00000516030 62 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms