Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU4-36P-201ENST00000364294 144 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 AL390729.2-201ENST00000416137 156 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 CALM2P2-201ENST00000428512 440 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 MRPS10P1-201ENST00000448483 130 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 AL031274.1-201ENST00000450334 232 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-1.21□□□□□ -2.6
CUX1P39880 AC116353.2-201ENST00000505332 712 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 AC005178.1-201ENST00000508392 440 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 AC010598.1-201ENST00000510378 103 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 AC021146.6-201ENST00000514659 117 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 RNA5SP454-201ENST00000517231 127 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC-1.21□□□□□ -2.6
CUX1P39880 MIR4639-201ENST00000584938 69 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 MIR4762-201ENST00000585261 75 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 AC073539.2-201ENST00000597113 165 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 5S_rRNA.15-201ENST00000611169 127 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 AC022306.2-201ENST00000617563 647 ntBASIC-1.21□□□□□ -2.6
CUX1P39880 MTND5P17-201ENST00000418405 1603 ntBASIC-1.22□□□□□ -2.6
CUX1P39880 Y_RNA.1-201ENST00000352915 104 ntBASIC-1.22□□□□□ -2.6
CUX1P39880 RNU6-1084P-201ENST00000362498 107 ntBASIC-1.22□□□□□ -2.6
CUX1P39880 RNU6-1229P-201ENST00000364295 107 ntBASIC-1.22□□□□□ -2.6
CUX1P39880 SNORA63C-201ENST00000364578 129 ntBASIC-1.22□□□□□ -2.6
CUX1P39880 RNU6-1144P-201ENST00000384247 104 ntBASIC-1.22□□□□□ -2.6
CUX1P39880 Y_RNA.537-201ENST00000384626 109 ntBASIC-1.22□□□□□ -2.6
CUX1P39880 RNU5A-5P-201ENST00000411054 116 ntBASIC-1.22□□□□□ -2.6
CUX1P39880 MIR378D2-201ENST00000580636 98 ntBASIC-1.22□□□□□ -2.6
CUX1P39880 FGF7P1-201ENST00000582820 288 ntBASIC-1.22□□□□□ -2.6
CUX1P39880 AC093726.3-201ENST00000637588 150 ntBASIC-1.22□□□□□ -2.6
CUX1P39880 RNU6-47P-201ENST00000383866 107 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 MTCO3P40-201ENST00000392516 676 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 RNU6-1133P-201ENST00000410963 100 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 AL358934.1-201ENST00000432346 324 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 RNU7-73P-201ENST00000458743 63 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 snoU13.6-201ENST00000458785 104 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 SNORA18.4-201ENST00000516440 124 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-1.23□□□□□ -2.61
CUX1P39880 AC010205.1-201ENST00000616668 449 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 AC008873.1-201ENST00000625051 138 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 MTND1P7-201ENST00000632801 297 ntBASIC-1.23□□□□□ -2.61
CUX1P39880 Y_RNA.536-201ENST00000384621 113 ntBASIC-1.24□□□□□ -2.61
CUX1P39880 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.24□□□□□ -2.61
CUX1P39880 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC-1.24□□□□□ -2.61
CUX1P39880 RNU7-62P-201ENST00000458856 62 ntBASIC-1.24□□□□□ -2.61
CUX1P39880 RPL23AP75-201ENST00000491601 451 ntBASIC-1.24□□□□□ -2.61
CUX1P39880 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC-1.24□□□□□ -2.61
CUX1P39880 SNORA31.14-201ENST00000516728 116 ntBASIC-1.24□□□□□ -2.61
CUX1P39880 RNU6-323P-201ENST00000521915 107 ntBASIC-1.24□□□□□ -2.61
CUX1P39880 AL359999.1-201ENST00000604513 294 ntBASIC-1.24□□□□□ -2.61
CUX1P39880 AC121334.2-201ENST00000605387 271 ntBASIC-1.24□□□□□ -2.61
CUX1P39880 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-1.24□□□□□ -2.61
CUX1P39880 AL162376.1-201ENST00000624117 175 ntBASIC-1.24□□□□□ -2.61
CUX1P39880 RNU6-462P-201ENST00000362659 105 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 U8.6-201ENST00000364939 135 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 SNORD28B-201ENST00000390993 75 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC-1.25□□□□□ -2.61
CUX1P39880 AC021146.9-201ENST00000512503 156 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 RNU7-51P-201ENST00000516560 62 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 MIR4306-201ENST00000583390 91 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 AC022306.3-201ENST00000619930 550 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 AL445523.1-201ENST00000451184 1362 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 SNORA22B-201ENST00000383876 138 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 MIR570-201ENST00000384917 97 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 MIR876-201ENST00000401147 81 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC-1.25□□□□□ -2.61
CUX1P39880 RNU6-1102P-201ENST00000516149 96 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 AL139418.1-201ENST00000613613 177 ntBASIC-1.25□□□□□ -2.61
CUX1P39880 ZNF299P-201ENST00000406845 1804 ntBASIC-1.26□□□□□ -2.61
CUX1P39880 RNU6-236P-201ENST00000363886 106 ntBASIC-1.26□□□□□ -2.61
CUX1P39880 AL590002.1-201ENST00000406554 418 ntBASIC-1.26□□□□□ -2.61
CUX1P39880 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC-1.26□□□□□ -2.61
CUX1P39880 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.26□□□□□ -2.61
CUX1P39880 RNU6-1175P-201ENST00000365200 107 ntBASIC-1.27□□□□□ -2.61
CUX1P39880 SNORA75.4-201ENST00000391278 119 ntBASIC-1.27□□□□□ -2.61
CUX1P39880 MIR1257-201ENST00000408490 117 ntBASIC-1.27□□□□□ -2.61
CUX1P39880 RNU6-721P-201ENST00000410155 105 ntBASIC-1.27□□□□□ -2.61
CUX1P39880 AC114878.1-201ENST00000441166 358 ntBASIC-1.27□□□□□ -2.61
CUX1P39880 EPS15P1-201ENST00000448836 336 ntBASIC-1.27□□□□□ -2.61
CUX1P39880 SCARNA18B-201ENST00000458806 135 ntBASIC-1.27□□□□□ -2.61
CUX1P39880 snoU13.16-201ENST00000459350 104 ntBASIC-1.27□□□□□ -2.61
CUX1P39880 RNA5SP216-201ENST00000516111 123 ntBASIC-1.27□□□□□ -2.61
CUX1P39880 RNA5SP180-201ENST00000516181 101 ntBASIC-1.27□□□□□ -2.61
CUX1P39880 MTND4LP25-201ENST00000570218 163 ntBASIC-1.27□□□□□ -2.61
CUX1P39880 RNU6-740P-201ENST00000364734 105 ntBASIC-1.28□□□□□ -2.61
CUX1P39880 RNU6-855P-201ENST00000410395 104 ntBASIC-1.28□□□□□ -2.61
CUX1P39880 RNA5SP494-201ENST00000410653 129 ntBASIC-1.28□□□□□ -2.61
CUX1P39880 Y_RNA.617-201ENST00000410920 90 ntBASIC-1.28□□□□□ -2.61
CUX1P39880 RNU6-1265P-201ENST00000516342 103 ntBASIC-1.28□□□□□ -2.61
CUX1P39880 AF250324.2-201ENST00000608299 610 ntBASIC-1.28□□□□□ -2.61
CUX1P39880 SNORA70.25-201ENST00000612741 95 ntBASIC-1.28□□□□□ -2.61
CUX1P39880 AC005609.4-201ENST00000625071 447 ntBASIC-1.28□□□□□ -2.61
CUX1P39880 Y_RNA.125-201ENST00000363371 111 ntBASIC-1.29□□□□□ -2.62
CUX1P39880 RNU6-376P-201ENST00000384731 106 ntBASIC-1.29□□□□□ -2.62
CUX1P39880 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-1.29□□□□□ -2.62
CUX1P39880 MIR1284-201ENST00000408337 120 ntBASIC-1.29□□□□□ -2.62
CUX1P39880 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC-1.29□□□□□ -2.62
CUX1P39880 Y_RNA.692-201ENST00000516627 105 ntBASIC-1.29□□□□□ -2.62
CUX1P39880 SNORD45.4-201ENST00000516629 73 ntBASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 144.7 ms