Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIR4769-201ENST00000584126 77 ntBASIC2.42□□□□□ -2.02
SMARCA1P28370 MIR4438-201ENST00000585271 93 ntBASIC2.42□□□□□ -2.02
SMARCA1P28370 AC007229.1-201ENST00000590455 412 ntBASIC2.42□□□□□ -2.02
SMARCA1P28370 Y_RNA.771-201ENST00000598668 102 ntBASIC2.42□□□□□ -2.02
SMARCA1P28370 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.42□□□□□ -2.02
SMARCA1P28370 U6.73-201ENST00000619194 103 ntBASIC2.42□□□□□ -2.02
SMARCA1P28370 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.42□□□□□ -2.02
SMARCA1P28370 Y_RNA.789-201ENST00000622480 102 ntBASIC2.42□□□□□ -2.02
SMARCA1P28370 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SMARCA1P28370 ZNF720P1-201ENST00000562403 1939 ntBASIC2.42□□□□□ -2.02
SMARCA1P28370 RNU1-22P-201ENST00000363334 158 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 SNORA33-201ENST00000363664 130 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 RNU6-117P-201ENST00000365415 107 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 RNA5SP465-201ENST00000391195 109 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.41□□□□□ -2.02
SMARCA1P28370 RPS20P10-201ENST00000451209 253 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 ATP5J2P3-201ENST00000451550 258 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 SNORD2.1-201ENST00000458762 69 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 snoU13.15-201ENST00000459407 104 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 snoU13.26-201ENST00000459452 105 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 AC010409.1-201ENST00000487382 476 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.41□□□□□ -2.02
SMARCA1P28370 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.41□□□□□ -2.02
SMARCA1P28370 AL137100.2-201ENST00000555786 315 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 AC011921.3-201ENST00000605540 361 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 AL008718.3-201ENST00000610217 321 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 AL353149.1-201ENST00000610667 244 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.41□□□□□ -2.02
SMARCA1P28370 AC245060.5-201ENST00000610778 3293 ntBASIC2.41□□□□□ -2.02
SMARCA1P28370 AC068700.1-201ENST00000565862 3754 ntBASIC2.4□□□□□ -2.02
SMARCA1P28370 AC134026.1-201ENST00000623249 2239 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 RNU6-862P-201ENST00000362804 105 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 RNU6-211P-201ENST00000384047 107 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 Y_RNA.456-201ENST00000384232 111 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 RNA5SP467-201ENST00000391274 118 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 MIR1283-2-201ENST00000408621 87 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 Y_RNA.590-201ENST00000410140 107 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 RNU6-847P-201ENST00000411115 108 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 AL139156.1-201ENST00000412785 841 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 AC099677.2-201ENST00000436385 175 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
SMARCA1P28370 RNU4-71P-201ENST00000516258 113 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 RNU6-1146P-201ENST00000516282 102 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 AC009779.6-201ENST00000603972 165 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 U6.108-201ENST00000637764 58 ntBASIC2.4□□□□□ -2.03
SMARCA1P28370 RNU1-96P-201ENST00000364163 162 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 SNORA16B-201ENST00000364674 135 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 SNORA72.4-201ENST00000384174 132 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 SNORA67.3-201ENST00000384366 140 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 RNU6-136P-201ENST00000384663 107 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 MIR597-201ENST00000384968 97 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 RNU11-3P-201ENST00000391111 133 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 RNU2-2P-201ENST00000410396 191 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 RNA5SP511-201ENST00000410487 115 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 BTF3P11-201ENST00000426582 477 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.39□□□□□ -2.03
SMARCA1P28370 RNA5SP233-201ENST00000459153 113 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 AC090255.1-201ENST00000495779 349 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 AC097462.1-201ENST00000514125 324 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 Y_RNA.679-201ENST00000516416 91 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 RNU7-128P-201ENST00000517247 62 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.39□□□□□ -2.03
SMARCA1P28370 AC004832.4-201ENST00000608952 331 ntBASIC2.39□□□□□ -2.03
SMARCA1P28370 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
SMARCA1P28370 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
SMARCA1P28370 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
SMARCA1P28370 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
SMARCA1P28370 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.38□□□□□ -2.03
SMARCA1P28370 Y_RNA.292-201ENST00000364904 97 ntBASIC2.38□□□□□ -2.03
SMARCA1P28370 RNY4P28-201ENST00000365281 93 ntBASIC2.38□□□□□ -2.03
SMARCA1P28370 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.38□□□□□ -2.03
SMARCA1P28370 MIR17-201ENST00000385012 84 ntBASIC2.38□□□□□ -2.03
SMARCA1P28370 RNU6-907P-201ENST00000390924 102 ntBASIC2.38□□□□□ -2.03
SMARCA1P28370 RNA5SP450-201ENST00000411206 102 ntBASIC2.38□□□□□ -2.03
SMARCA1P28370 EBAG9P1-201ENST00000418955 543 ntBASIC2.38□□□□□ -2.03
SMARCA1P28370 RNU7-172P-201ENST00000517125 64 ntBASIC2.38□□□□□ -2.03
SMARCA1P28370 AP005660.1-201ENST00000522972 293 ntBASIC2.38□□□□□ -2.03
SMARCA1P28370 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
SMARCA1P28370 AL078604.3-201ENST00000615580 211 ntBASIC2.38□□□□□ -2.03
SMARCA1P28370 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.38□□□□□ -2.03
SMARCA1P28370 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.38□□□□□ -2.03
SMARCA1P28370 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
SMARCA1P28370 U8.7-201ENST00000364940 136 ntBASIC2.37□□□□□ -2.03
SMARCA1P28370 Y_RNA.515-201ENST00000384535 112 ntBASIC2.37□□□□□ -2.03
SMARCA1P28370 RNU6-1186P-201ENST00000410429 97 ntBASIC2.37□□□□□ -2.03
SMARCA1P28370 HMGN2P3-201ENST00000433603 273 ntBASIC2.37□□□□□ -2.03
SMARCA1P28370 HMGN2P5-201ENST00000436882 273 ntBASIC2.37□□□□□ -2.03
SMARCA1P28370 MTND2P29-201ENST00000438595 412 ntBASIC2.37□□□□□ -2.03
SMARCA1P28370 AC104332.1-201ENST00000440471 797 ntBASIC2.37□□□□□ -2.03
SMARCA1P28370 AC015720.1-201ENST00000565251 277 ntBASIC2.37□□□□□ -2.03
SMARCA1P28370 AC130289.1-201ENST00000577321 73 ntBASIC2.37□□□□□ -2.03
SMARCA1P28370 AL442067.1-201ENST00000613261 223 ntBASIC2.37□□□□□ -2.03
SMARCA1P28370 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SMARCA1P28370 MTCO2P33-201ENST00000402100 465 ntBASIC2.36□□□□□ -2.03
SMARCA1P28370 RNU7-141P-201ENST00000459304 62 ntBASIC2.36□□□□□ -2.03
SMARCA1P28370 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.36□□□□□ -2.03
SMARCA1P28370 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.36□□□□□ -2.03
SMARCA1P28370 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.36□□□□□ -2.03
SMARCA1P28370 AC073349.3-201ENST00000617616 186 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms