Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 MTCO2P33-201ENST00000402100 465 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 RNU2-2P-201ENST00000410396 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 AC008134.1-201ENST00000420943 193 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 CR769767.1-201ENST00000436337 346 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 AL357134.1-201ENST00000445848 426 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 AL137159.1-201ENST00000452808 512 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 snoU13.26-201ENST00000459452 105 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 AC091021.1-201ENST00000468051 388 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 RPS26P55-201ENST00000471178 356 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 SNORA4.4-201ENST00000515921 135 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 RNU6-1278P-201ENST00000516130 107 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 RN7SKP164-201ENST00000516138 266 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 RNU6-1337P-201ENST00000516525 95 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 RNA5SP490-201ENST00000517141 136 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 MIR4446-201ENST00000578505 67 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 MIR3133-201ENST00000583157 78 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 RNU2-4P-201ENST00000606190 192 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 U2.15-201ENST00000611544 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 U2.16-201ENST00000613119 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 U2.12-201ENST00000613778 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 AC245884.12-201ENST00000615364 59 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 U2.9-201ENST00000615427 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 U2.11-201ENST00000616345 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 U2.2-201ENST00000616535 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 U2.3-201ENST00000617785 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 U2.19-201ENST00000618602 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 RNU2-1-201ENST00000618664 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 U2.6-201ENST00000619225 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 U2.5-201ENST00000619465 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 U2.10-201ENST00000620268 191 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 ZNF271P-202ENST00000465539 1970 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.06
HOXD9P28356 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HOXD9P28356 RNU6-1323P-201ENST00000384025 107 ntBASIC2.2□□□□□ -2.06
HOXD9P28356 AC123900.1-201ENST00000420390 96 ntBASIC2.2□□□□□ -2.06
HOXD9P28356 AC010531.2-201ENST00000465012 153 ntBASIC2.2□□□□□ -2.06
HOXD9P28356 AC005840.1-201ENST00000498412 377 ntBASIC2.2□□□□□ -2.06
HOXD9P28356 PRELID2P1-201ENST00000552837 301 ntBASIC2.2□□□□□ -2.06
HOXD9P28356 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.2□□□□□ -2.06
HOXD9P28356 Y_RNA.802-201ENST00000614892 130 ntBASIC2.2□□□□□ -2.06
HOXD9P28356 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.2□□□□□ -2.06
HOXD9P28356 MIR219B-201ENST00000637023 88 ntBASIC2.2□□□□□ -2.06
HOXD9P28356 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HOXD9P28356 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
HOXD9P28356 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.19□□□□□ -2.06
HOXD9P28356 RNU6-103P-201ENST00000363686 107 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 U8.7-201ENST00000364940 136 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 RNU6-1240P-201ENST00000365155 104 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 Y_RNA.412-201ENST00000384001 104 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 RNU6-804P-201ENST00000384286 107 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 Y_RNA.580-201ENST00000391004 95 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 SNORA48.3-201ENST00000391081 134 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 RNU5E-9P-201ENST00000411164 104 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 RNA5SP270-201ENST00000411361 118 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 AC016909.1-201ENST00000415916 166 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXD9P28356 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.19□□□□□ -2.06
HOXD9P28356 AC018868.1-201ENST00000491307 315 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXD9P28356 RNU7-200P-201ENST00000516105 62 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 RNU7-115P-201ENST00000516433 55 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 AP003357.1-201ENST00000604497 148 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 MIR6715A-201ENST00000615929 79 ntBASIC2.19□□□□□ -2.06
HOXD9P28356 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
HOXD9P28356 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
HOXD9P28356 SNORD114-1-201ENST00000362705 72 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 RNU6-1205P-201ENST00000363625 106 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 snoU2_19.4-201ENST00000364329 80 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 Y_RNA.293-201ENST00000364908 93 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 RNU6-275P-201ENST00000364910 107 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 RNU6-117P-201ENST00000365415 107 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 RNU6-187P-201ENST00000384139 106 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 SNORD116-13-201ENST00000384408 92 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 EDDM3CP-201ENST00000415977 425 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 AC010154.1-201ENST00000425857 269 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXD9P28356 RNA5SP20-201ENST00000515976 84 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 MIR3910-1-201ENST00000580936 111 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 AC004832.4-201ENST00000608952 331 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 AC092881.1-201ENST00000638218 2733 ntBASIC2.18□□□□□ -2.06
HOXD9P28356 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HOXD9P28356 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXD9P28356 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXD9P28356 MIR340-201ENST00000362125 95 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 Y_RNA.182-201ENST00000363880 111 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 RNU4-10P-201ENST00000364383 140 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 Y_RNA.272-201ENST00000364696 102 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 SNORD50.2-201ENST00000365465 70 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 MIR616-201ENST00000385293 97 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXD9P28356 RNU6-856P-201ENST00000516959 98 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 RNU6-667P-201ENST00000517186 102 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 MIR4744-201ENST00000581563 82 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 MIR5002-201ENST00000584713 97 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 AC005972.2-201ENST00000604690 348 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 AC104465.1-201ENST00000611365 139 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 MIR548AY-201ENST00000617669 107 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 FO624990.1-201ENST00000636373 85 ntBASIC2.17□□□□□ -2.06
HOXD9P28356 CENPCP1-201ENST00000533085 2578 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 144.8 ms