Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PDCL2P1-201ENST00000419302 352 ntBASIC0.28□□□□□ -2.36
SHOX2O60902 RPL30P16-201ENST00000419341 429 ntBASIC0.28□□□□□ -2.36
SHOX2O60902 RNU7-187P-201ENST00000458985 68 ntBASIC0.28□□□□□ -2.36
SHOX2O60902 HMGN2P26-201ENST00000463169 339 ntBASIC0.28□□□□□ -2.36
SHOX2O60902 RPS3AP17-201ENST00000472594 777 ntBASIC0.28□□□□□ -2.36
SHOX2O60902 AC002350.1-201ENST00000490759 375 ntBASIC0.28□□□□□ -2.36
SHOX2O60902 ACA59.1-201ENST00000515966 143 ntBASIC0.28□□□□□ -2.36
SHOX2O60902 Y_RNA.683-201ENST00000516508 93 ntBASIC0.28□□□□□ -2.36
SHOX2O60902 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.28□□□□□ -2.36
SHOX2O60902 AC087752.4-201ENST00000605911 462 ntBASIC0.28□□□□□ -2.36
SHOX2O60902 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.28□□□□□ -2.36
SHOX2O60902 AC090625.1-201ENST00000357130 210 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 RNU6-1322P-201ENST00000364309 107 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 SNORD49B-201ENST00000365172 72 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 MIR514A2-201ENST00000385131 88 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 MIR514A3-201ENST00000385132 88 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 MIR1185-1-201ENST00000408598 86 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 MTCO2P12-201ENST00000427426 682 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 RPL30P10-201ENST00000488148 337 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 AC018710.1-201ENST00000506509 158 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.27□□□□□ -2.37
SHOX2O60902 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 MIR5093-201ENST00000583199 100 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 MIR4768-201ENST00000585270 74 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 AL008636.1-201ENST00000625038 1018 ntBASIC0.27□□□□□ -2.37
SHOX2O60902 SNORA36.2-201ENST00000384004 127 ntBASIC0.26□□□□□ -2.37
SHOX2O60902 Y_RNA.481-201ENST00000384373 102 ntBASIC0.26□□□□□ -2.37
SHOX2O60902 MIR520C-201ENST00000385005 87 ntBASIC0.26□□□□□ -2.37
SHOX2O60902 RNA5SP222-201ENST00000411039 105 ntBASIC0.26□□□□□ -2.37
SHOX2O60902 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.26□□□□□ -2.37
SHOX2O60902 Z98949.2-201ENST00000440996 144 ntBASIC0.26□□□□□ -2.37
SHOX2O60902 MTND3P16-201ENST00000452205 344 ntBASIC0.26□□□□□ -2.37
SHOX2O60902 AC024933.1-201ENST00000608472 348 ntBASIC0.26□□□□□ -2.37
SHOX2O60902 Y_RNA.151-201ENST00000363566 112 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 RNU6-1264P-201ENST00000383891 107 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 SNORA69-201ENST00000383895 132 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 SNORD105-201ENST00000386910 85 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 MIR1827-201ENST00000408549 66 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 RNU4-55P-201ENST00000410731 137 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 MRPS18CP6-201ENST00000423587 223 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 AL137792.2-201ENST00000443484 235 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 PCNPP5-201ENST00000452246 481 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 SUMO1P2-201ENST00000452524 304 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 MTND3P7-201ENST00000474435 343 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.25□□□□□ -2.37
SHOX2O60902 AC046134.1-201ENST00000514454 666 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 RN7SKP164-201ENST00000516138 266 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 SNORA74.3-201ENST00000517108 154 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 AF235103.2-201ENST00000525753 346 ntBASIC0.25□□□□□ -2.37
SHOX2O60902 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.25□□□□□ -2.37
SHOX2O60902 MIR101-1-201ENST00000362265 75 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 SNORD14.1-201ENST00000365609 90 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.24□□□□□ -2.37
SHOX2O60902 RNY3P5-201ENST00000384127 102 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 RNU6-1297P-201ENST00000384415 104 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.24□□□□□ -2.37
SHOX2O60902 AC074198.2-201ENST00000508153 258 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 RNU7-175P-201ENST00000515915 61 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 RN7SKP298-201ENST00000515950 94 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 RNU6-1116P-201ENST00000517269 99 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.24□□□□□ -2.37
SHOX2O60902 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.24□□□□□ -2.37
SHOX2O60902 RNU6-94P-201ENST00000607728 107 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 AC097520.1-201ENST00000624435 385 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 AC099654.12-201ENST00000639868 649 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
SHOX2O60902 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
SHOX2O60902 MTND5P16-201ENST00000460269 1703 ntBASIC0.24□□□□□ -2.37
SHOX2O60902 SNORA25.3-201ENST00000363205 127 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 RNU6-254P-201ENST00000363377 107 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 Y_RNA.231-201ENST00000364358 102 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 Y_RNA.568-201ENST00000384742 113 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 MIR140-201ENST00000385282 100 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 RNU6-177P-201ENST00000411257 104 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 AC243428.1-201ENST00000421099 264 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.23□□□□□ -2.37
SHOX2O60902 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.23□□□□□ -2.37
SHOX2O60902 RPL23AP54-201ENST00000495129 419 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 RNU7-43P-201ENST00000516554 64 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 RNU6-1096P-201ENST00000517089 102 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 MTATP6P24-201ENST00000576835 677 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 AL357075.2-201ENST00000614906 189 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 AC127459.3-201ENST00000624328 466 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.23□□□□□ -2.37
SHOX2O60902 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 MIR371B-201ENST00000638082 66 ntBASIC0.23□□□□□ -2.37
SHOX2O60902 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.22□□□□□ -2.37
SHOX2O60902 MIRLET7D-201ENST00000362263 87 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 RNU6-522P-201ENST00000364497 107 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 SNORD113.3-201ENST00000364630 78 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 RNU6-1184P-201ENST00000384588 108 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 MIR136-201ENST00000385207 82 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 MIR873-201ENST00000401120 77 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 PIGPP3-201ENST00000425307 415 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 USMG5P1-201ENST00000425964 177 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.22□□□□□ -2.37
SHOX2O60902 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.22□□□□□ -2.37
SHOX2O60902 SNORA68.3-201ENST00000515906 83 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 RNU7-41P-201ENST00000515917 61 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms