Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RNU6-436P-201ENST00000516171 114 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 RNU6-1291P-201ENST00000516591 104 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 RNU6-63P-201ENST00000516690 95 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 RNU7-28P-201ENST00000516759 62 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.75□□□□□ -2.13
HOXC11O43248 MIR4419B-201ENST00000577260 68 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.75□□□□□ -2.13
HOXC11O43248 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
HOXC11O43248 RNA5SP259-201ENST00000365541 109 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 SNORA63.7-201ENST00000365579 123 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 MIR194-1-201ENST00000384892 85 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 MIR513A1-201ENST00000385138 129 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 RNU6-710P-201ENST00000410424 105 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 AL161935.2-201ENST00000414627 60 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 RPEP5-201ENST00000441137 268 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.74□□□□□ -2.13
HOXC11O43248 RNU6-1096P-201ENST00000517089 102 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 Y_RNA.721-201ENST00000517207 102 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 AC022616.4-201ENST00000522985 181 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.74□□□□□ -2.13
HOXC11O43248 MIR4423-201ENST00000580922 80 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 AC091178.2-201ENST00000584401 117 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 AC040896.1-201ENST00000613819 479 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 AC073349.3-201ENST00000617616 186 ntBASIC1.74□□□□□ -2.13
HOXC11O43248 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.73□□□□□ -2.13
HOXC11O43248 WWP1P1-201ENST00000466609 2769 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 SNORD1A-201ENST00000364968 72 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 Y_RNA.329-201ENST00000365209 107 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 Y_RNA.338-201ENST00000365320 114 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 SNORD63-201ENST00000384262 68 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 Y_RNA.551-201ENST00000384661 102 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 RNA5SP511-201ENST00000410487 115 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 RNU2-61P-201ENST00000411069 191 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 AC099513.1-201ENST00000490423 301 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.73□□□□□ -2.13
HOXC11O43248 MIR4498-201ENST00000577599 66 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 MIR3937-201ENST00000580135 106 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 MIR3618-201ENST00000580330 88 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.73□□□□□ -2.13
HOXC11O43248 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
HOXC11O43248 Y_RNA.148-201ENST00000363557 117 ntBASIC1.72□□□□□ -2.13
HOXC11O43248 Y_RNA.389-201ENST00000383924 113 ntBASIC1.72□□□□□ -2.13
HOXC11O43248 RNU6-937P-201ENST00000384325 106 ntBASIC1.72□□□□□ -2.13
HOXC11O43248 MIR548P-201ENST00000408336 84 ntBASIC1.72□□□□□ -2.13
HOXC11O43248 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.72□□□□□ -2.13
HOXC11O43248 AL162725.1-201ENST00000435405 301 ntBASIC1.72□□□□□ -2.13
HOXC11O43248 AL049830.1-201ENST00000468034 425 ntBASIC1.72□□□□□ -2.13
HOXC11O43248 AL358944.1-201ENST00000528537 144 ntBASIC1.72□□□□□ -2.13
HOXC11O43248 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.72□□□□□ -2.13
HOXC11O43248 AC015688.6-201ENST00000577737 104 ntBASIC1.72□□□□□ -2.13
HOXC11O43248 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.72□□□□□ -2.13
HOXC11O43248 AL513423.1-201ENST00000621695 132 ntBASIC1.72□□□□□ -2.13
HOXC11O43248 SNORD3E-202ENST00000627253 216 ntBASIC1.72□□□□□ -2.13
HOXC11O43248 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
HOXC11O43248 SNORA1B-201ENST00000362535 133 ntBASIC1.71□□□□□ -2.14
HOXC11O43248 AC117470.1-201ENST00000381974 330 ntBASIC1.71□□□□□ -2.14
HOXC11O43248 RNU6-1065P-201ENST00000384513 106 ntBASIC1.71□□□□□ -2.14
HOXC11O43248 RNA5SP482-201ENST00000391269 118 ntBASIC1.71□□□□□ -2.14
HOXC11O43248 Y_RNA.621-201ENST00000411065 96 ntBASIC1.71□□□□□ -2.14
HOXC11O43248 AL354751.2-201ENST00000415471 210 ntBASIC1.71□□□□□ -2.14
HOXC11O43248 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.71□□□□□ -2.14
HOXC11O43248 AC245517.4-201ENST00000448601 281 ntBASIC1.71□□□□□ -2.14
HOXC11O43248 SUMO2P16-201ENST00000519475 264 ntBASIC1.71□□□□□ -2.14
HOXC11O43248 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.71□□□□□ -2.14
HOXC11O43248 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.71□□□□□ -2.14
HOXC11O43248 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HOXC11O43248 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
HOXC11O43248 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
HOXC11O43248 MIR378A-201ENST00000362177 66 ntBASIC1.7□□□□□ -2.14
HOXC11O43248 Y_RNA.11-201ENST00000362375 109 ntBASIC1.7□□□□□ -2.14
HOXC11O43248 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.7□□□□□ -2.14
HOXC11O43248 Y_RNA.394-201ENST00000383942 103 ntBASIC1.7□□□□□ -2.14
HOXC11O43248 RNA5SP445-201ENST00000515889 115 ntBASIC1.7□□□□□ -2.14
HOXC11O43248 Y_RNA.715-201ENST00000517082 110 ntBASIC1.7□□□□□ -2.14
HOXC11O43248 AC019176.1-201ENST00000518519 225 ntBASIC1.7□□□□□ -2.14
HOXC11O43248 AC015720.1-201ENST00000565251 277 ntBASIC1.7□□□□□ -2.14
HOXC11O43248 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.7□□□□□ -2.14
HOXC11O43248 MIR4303-201ENST00000581299 66 ntBASIC1.7□□□□□ -2.14
HOXC11O43248 snoU13.31-201ENST00000607291 104 ntBASIC1.7□□□□□ -2.14
HOXC11O43248 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.7□□□□□ -2.14
HOXC11O43248 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
HOXC11O43248 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
HOXC11O43248 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
HOXC11O43248 MIR302D-201ENST00000362275 68 ntBASIC1.69□□□□□ -2.14
HOXC11O43248 Y_RNA.138-201ENST00000363462 102 ntBASIC1.69□□□□□ -2.14
HOXC11O43248 RNU6-823P-201ENST00000391042 103 ntBASIC1.69□□□□□ -2.14
HOXC11O43248 RNU4-62P-201ENST00000410125 130 ntBASIC1.69□□□□□ -2.14
HOXC11O43248 RNU6-855P-201ENST00000410395 104 ntBASIC1.69□□□□□ -2.14
HOXC11O43248 RPL30P13-201ENST00000418873 348 ntBASIC1.69□□□□□ -2.14
HOXC11O43248 SNX2P2-201ENST00000424553 323 ntBASIC1.69□□□□□ -2.14
HOXC11O43248 SEPT14P8-201ENST00000508026 178 ntBASIC1.69□□□□□ -2.14
HOXC11O43248 RNU6-966P-201ENST00000516479 104 ntBASIC1.69□□□□□ -2.14
HOXC11O43248 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.69□□□□□ -2.14
HOXC11O43248 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
HOXC11O43248 RNU6-450P-201ENST00000364654 107 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 RNA5SP363-201ENST00000365072 115 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 SNORA22B-201ENST00000383876 138 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 Y_RNA.645-201ENST00000391229 102 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 RNU4-30P-201ENST00000410245 143 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 BTF3P4-201ENST00000418852 495 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms