Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MIR520C-201ENST00000385005 87 ntBASIC0.44□□□□□ -2.34
LSM1O15116 RNU1-119P-201ENST00000391122 165 ntBASIC0.44□□□□□ -2.34
LSM1O15116 RNA5SP511-201ENST00000410487 115 ntBASIC0.44□□□□□ -2.34
LSM1O15116 AC244023.1-201ENST00000426884 112 ntBASIC0.44□□□□□ -2.34
LSM1O15116 AC092423.1-201ENST00000430165 186 ntBASIC0.44□□□□□ -2.34
LSM1O15116 AC092628.1-201ENST00000436250 252 ntBASIC0.44□□□□□ -2.34
LSM1O15116 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC0.44□□□□□ -2.34
LSM1O15116 MTND1P1-201ENST00000445453 368 ntBASIC0.44□□□□□ -2.34
LSM1O15116 RPS20P10-201ENST00000451209 253 ntBASIC0.44□□□□□ -2.34
LSM1O15116 ELOCP24-201ENST00000456370 334 ntBASIC0.44□□□□□ -2.34
LSM1O15116 Z83818.1-201ENST00000603584 150 ntBASIC0.44□□□□□ -2.34
LSM1O15116 AC242498.1-201ENST00000604134 111 ntBASIC0.44□□□□□ -2.34
LSM1O15116 AC005014.2-201ENST00000607795 599 ntBASIC0.44□□□□□ -2.34
LSM1O15116 AF250324.2-201ENST00000608299 610 ntBASIC0.44□□□□□ -2.34
LSM1O15116 AC243994.1-201ENST00000618627 109 ntBASIC0.44□□□□□ -2.34
LSM1O15116 Y_RNA.48-201ENST00000362710 103 ntBASIC0.43□□□□□ -2.34
LSM1O15116 Y_RNA.51-201ENST00000362725 102 ntBASIC0.43□□□□□ -2.34
LSM1O15116 RNY1P16-201ENST00000363063 111 ntBASIC0.43□□□□□ -2.34
LSM1O15116 RNA5SP48-201ENST00000363969 126 ntBASIC0.43□□□□□ -2.34
LSM1O15116 Y_RNA.498-201ENST00000384460 102 ntBASIC0.43□□□□□ -2.34
LSM1O15116 RNU6-831P-201ENST00000384548 107 ntBASIC0.43□□□□□ -2.34
LSM1O15116 Y_RNA.557-201ENST00000384680 107 ntBASIC0.43□□□□□ -2.34
LSM1O15116 RNU6-1067P-201ENST00000384752 107 ntBASIC0.43□□□□□ -2.34
LSM1O15116 RNU6-1105P-201ENST00000384774 107 ntBASIC0.43□□□□□ -2.34
LSM1O15116 RNU6-1237P-201ENST00000384777 107 ntBASIC0.43□□□□□ -2.34
LSM1O15116 SNORD111-201ENST00000408139 94 ntBASIC0.43□□□□□ -2.34
LSM1O15116 MIR1827-201ENST00000408549 66 ntBASIC0.43□□□□□ -2.34
LSM1O15116 MTND1P29-201ENST00000448112 647 ntBASIC0.43□□□□□ -2.34
LSM1O15116 U8.22-201ENST00000459141 133 ntBASIC0.43□□□□□ -2.34
LSM1O15116 RNU7-43P-201ENST00000516554 64 ntBASIC0.43□□□□□ -2.34
LSM1O15116 RNU6-1223P-201ENST00000517124 104 ntBASIC0.43□□□□□ -2.34
LSM1O15116 RNU6-1314P-201ENST00000517139 104 ntBASIC0.43□□□□□ -2.34
LSM1O15116 AF235103.2-201ENST00000525753 346 ntBASIC0.43□□□□□ -2.34
LSM1O15116 AL512605.2-201ENST00000592972 256 ntBASIC0.43□□□□□ -2.34
LSM1O15116 RNU6-94P-201ENST00000607728 107 ntBASIC0.43□□□□□ -2.34
LSM1O15116 MIR516B2-201ENST00000385190 85 ntBASIC0.42□□□□□ -2.34
LSM1O15116 MIR136-201ENST00000385207 82 ntBASIC0.42□□□□□ -2.34
LSM1O15116 RNU6-373P-201ENST00000411247 98 ntBASIC0.42□□□□□ -2.34
LSM1O15116 AC114737.2-201ENST00000421583 173 ntBASIC0.42□□□□□ -2.34
LSM1O15116 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.42□□□□□ -2.34
LSM1O15116 RNU6-625P-201ENST00000459412 107 ntBASIC0.42□□□□□ -2.34
LSM1O15116 RN7SKP12-201ENST00000516275 143 ntBASIC0.42□□□□□ -2.34
LSM1O15116 Y_RNA.676-201ENST00000516393 96 ntBASIC0.42□□□□□ -2.34
LSM1O15116 RNU6-566P-201ENST00000516790 107 ntBASIC0.42□□□□□ -2.34
LSM1O15116 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.42□□□□□ -2.34
LSM1O15116 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.42□□□□□ -2.34
LSM1O15116 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.41□□□□□ -2.34
LSM1O15116 SNORD115-30-201ENST00000364117 82 ntBASIC0.41□□□□□ -2.34
LSM1O15116 Y_RNA.224-201ENST00000364308 111 ntBASIC0.41□□□□□ -2.34
LSM1O15116 SNORD14.1-201ENST00000365609 90 ntBASIC0.41□□□□□ -2.34
LSM1O15116 SNORD116-1-201ENST00000384335 95 ntBASIC0.41□□□□□ -2.34
LSM1O15116 MIR522-201ENST00000385071 87 ntBASIC0.41□□□□□ -2.34
LSM1O15116 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.41□□□□□ -2.34
LSM1O15116 MTND3P21-201ENST00000433774 331 ntBASIC0.41□□□□□ -2.34
LSM1O15116 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.41□□□□□ -2.34
LSM1O15116 SNORA40.9-201ENST00000515895 93 ntBASIC0.41□□□□□ -2.34
LSM1O15116 SNORA25.10-201ENST00000515926 124 ntBASIC0.41□□□□□ -2.34
LSM1O15116 RNU2-12P-201ENST00000517216 168 ntBASIC0.41□□□□□ -2.34
LSM1O15116 AL078603.1-201ENST00000603824 313 ntBASIC0.41□□□□□ -2.34
LSM1O15116 AL136317.1-201ENST00000612653 226 ntBASIC0.41□□□□□ -2.34
LSM1O15116 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.41□□□□□ -2.34
LSM1O15116 AC027514.1-201ENST00000588561 1603 ntBASIC0.4□□□□□ -2.35
LSM1O15116 RNU6-1090P-201ENST00000364065 94 ntBASIC0.4□□□□□ -2.35
LSM1O15116 Y_RNA.301-201ENST00000364990 103 ntBASIC0.4□□□□□ -2.35
LSM1O15116 Y_RNA.358-201ENST00000365491 99 ntBASIC0.4□□□□□ -2.35
LSM1O15116 SNORA50A-201ENST00000384225 134 ntBASIC0.4□□□□□ -2.35
LSM1O15116 MIR15B-201ENST00000385045 98 ntBASIC0.4□□□□□ -2.35
LSM1O15116 RNA5SP220-201ENST00000516298 104 ntBASIC0.4□□□□□ -2.35
LSM1O15116 RNU6-1337P-201ENST00000516525 95 ntBASIC0.4□□□□□ -2.35
LSM1O15116 RNU1-54P-201ENST00000517181 120 ntBASIC0.4□□□□□ -2.35
LSM1O15116 AC109635.3-201ENST00000529536 185 ntBASIC0.4□□□□□ -2.35
LSM1O15116 AC022079.1-201ENST00000621546 602 ntBASIC0.4□□□□□ -2.35
LSM1O15116 MIR5087-201ENST00000635826 76 ntBASIC0.4□□□□□ -2.35
LSM1O15116 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.39□□□□□ -2.35
LSM1O15116 SNORD113.3-201ENST00000364630 78 ntBASIC0.39□□□□□ -2.35
LSM1O15116 RNA5SP475-201ENST00000410568 110 ntBASIC0.39□□□□□ -2.35
LSM1O15116 RNU6-177P-201ENST00000411257 104 ntBASIC0.39□□□□□ -2.35
LSM1O15116 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.39□□□□□ -2.35
LSM1O15116 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.39□□□□□ -2.35
LSM1O15116 UBE2V1P7-201ENST00000446395 340 ntBASIC0.39□□□□□ -2.35
LSM1O15116 AC011195.1-201ENST00000578177 177 ntBASIC0.39□□□□□ -2.35
LSM1O15116 AC018462.2-201ENST00000605375 395 ntBASIC0.39□□□□□ -2.35
LSM1O15116 MIR6516-201ENST00000630554 81 ntBASIC0.39□□□□□ -2.35
LSM1O15116 MIR3662-201ENST00000637030 95 ntBASIC0.39□□□□□ -2.35
LSM1O15116 AC134026.1-201ENST00000623249 2239 ntBASIC0.39□□□□□ -2.35
LSM1O15116 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
LSM1O15116 RNU6-654P-201ENST00000364373 107 ntBASIC0.38□□□□□ -2.35
LSM1O15116 Y_RNA.253-201ENST00000364562 112 ntBASIC0.38□□□□□ -2.35
LSM1O15116 SNORD105-201ENST00000386910 85 ntBASIC0.38□□□□□ -2.35
LSM1O15116 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.38□□□□□ -2.35
LSM1O15116 RNU6-1304P-201ENST00000411374 106 ntBASIC0.38□□□□□ -2.35
LSM1O15116 AC098934.3-201ENST00000430450 190 ntBASIC0.38□□□□□ -2.35
LSM1O15116 SNORD123-201ENST00000459473 70 ntBASIC0.38□□□□□ -2.35
LSM1O15116 AC026782.1-201ENST00000512952 449 ntBASIC0.38□□□□□ -2.35
LSM1O15116 RNU4-57P-201ENST00000515980 135 ntBASIC0.38□□□□□ -2.35
LSM1O15116 RNU6-229P-201ENST00000516614 102 ntBASIC0.38□□□□□ -2.35
LSM1O15116 SNORA18.7-201ENST00000516910 131 ntBASIC0.38□□□□□ -2.35
LSM1O15116 MIR6128-201ENST00000615528 109 ntBASIC0.38□□□□□ -2.35
LSM1O15116 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC0.38□□□□□ -2.35
LSM1O15116 MIR6513-201ENST00000621188 64 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms