Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 RPL39P5-202ENST00000512505 151 ntBASIC-1.08□□□□□ -2.58
HMGN4O00479 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC-1.08□□□□□ -2.58
HMGN4O00479 AC069113.1-201ENST00000517763 267 ntBASIC-1.08□□□□□ -2.58
HMGN4O00479 MTND2P32-201ENST00000521584 1038 ntBASIC-1.08□□□□□ -2.58
HMGN4O00479 MIR6740-201ENST00000618268 113 ntBASIC-1.08□□□□□ -2.58
HMGN4O00479 AC068880.4-201ENST00000623082 495 ntBASIC-1.08□□□□□ -2.58
HMGN4O00479 RNU6-1084P-201ENST00000362498 107 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 SNORA27.1-201ENST00000362604 124 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 RNU6-1287P-201ENST00000362914 107 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 SNORD115-8-201ENST00000363856 82 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 SNORD115-38-201ENST00000365037 82 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 RNU6-393P-201ENST00000384475 107 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 RNU6-1060P-201ENST00000384664 107 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC-1.09□□□□□ -2.58
HMGN4O00479 Y_RNA.617-201ENST00000410920 90 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 MTCO2P8-201ENST00000412213 658 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 ELOCP4-201ENST00000420090 333 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC-1.09□□□□□ -2.58
HMGN4O00479 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC-1.09□□□□□ -2.58
HMGN4O00479 AC010486.3-201ENST00000511602 785 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 Y_RNA.681-201ENST00000516445 113 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 AC022784.5-201ENST00000522241 437 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC-1.09□□□□□ -2.58
HMGN4O00479 Z94722.1-201ENST00000604328 474 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC-1.09□□□□□ -2.58
HMGN4O00479 MIR6507-201ENST00000613630 70 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 AC127459.3-201ENST00000624328 466 ntBASIC-1.09□□□□□ -2.58
HMGN4O00479 MTND5P17-201ENST00000418405 1603 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-1.1□□□□□ -2.59
HMGN4O00479 Y_RNA.32-201ENST00000362589 110 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 Y_RNA.42-201ENST00000362660 108 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 snoU2-30.1-201ENST00000365012 70 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 RNU6-1175P-201ENST00000365200 107 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 RNU6-434P-201ENST00000384376 107 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 MIR522-201ENST00000385071 87 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 MIR450B-201ENST00000401182 78 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC-1.1□□□□□ -2.59
HMGN4O00479 AC010424.1-201ENST00000506336 297 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 AC018710.1-201ENST00000506509 158 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 RNU2-69P-201ENST00000516061 100 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 SNORA25.14-201ENST00000516481 132 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 SNORA31.14-201ENST00000516728 116 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 IGKV1-22-201ENST00000524313 326 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 AC245008.1-201ENST00000608123 476 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 AC244669.1-204ENST00000621564 178 ntBASIC-1.1□□□□□ -2.59
HMGN4O00479 SRP54-214ENST00000630962 162 ntTSL 5 BASIC-1.1□□□□□ -2.59
HMGN4O00479 RNU6-727P-201ENST00000363592 107 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 SNORD95.1-201ENST00000364099 68 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 RNU6-1162P-201ENST00000384443 104 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 SNORD115.1-201ENST00000391109 76 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 MIR876-201ENST00000401147 81 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 RNU6-1165P-201ENST00000410119 107 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 AC090844.1-201ENST00000422019 156 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 MTND1P35-201ENST00000526739 508 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 MIR3684-201ENST00000579779 74 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 MIR4791-201ENST00000607666 84 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 SNORA70.25-201ENST00000612741 95 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 MIR8066-201ENST00000617280 78 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 U6.114-201ENST00000636407 96 ntBASIC-1.11□□□□□ -2.59
HMGN4O00479 Y_RNA.123-201ENST00000363338 102 ntBASIC-1.12□□□□□ -2.59
HMGN4O00479 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1.12□□□□□ -2.59
HMGN4O00479 MTCO3P40-201ENST00000392516 676 ntBASIC-1.12□□□□□ -2.59
HMGN4O00479 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-1.12□□□□□ -2.59
HMGN4O00479 AL355994.1-201ENST00000424379 260 ntBASIC-1.12□□□□□ -2.59
HMGN4O00479 MTND3P9-201ENST00000429526 346 ntBASIC-1.12□□□□□ -2.59
HMGN4O00479 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC-1.12□□□□□ -2.59
HMGN4O00479 MTATP6P26-201ENST00000445926 662 ntBASIC-1.12□□□□□ -2.59
HMGN4O00479 AL138752.1-201ENST00000452964 351 ntBASIC-1.12□□□□□ -2.59
HMGN4O00479 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC-1.12□□□□□ -2.59
HMGN4O00479 SCARNA20.2-201ENST00000516052 116 ntBASIC-1.12□□□□□ -2.59
HMGN4O00479 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-1.12□□□□□ -2.59
HMGN4O00479 MTCO3P23-201ENST00000561363 289 ntBASIC-1.12□□□□□ -2.59
HMGN4O00479 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC-1.12□□□□□ -2.59
HMGN4O00479 Y_RNA.368-201ENST00000365547 113 ntBASIC-1.13□□□□□ -2.59
HMGN4O00479 Y_RNA.371-201ENST00000365591 113 ntBASIC-1.13□□□□□ -2.59
HMGN4O00479 RNU6-136P-201ENST00000384663 107 ntBASIC-1.13□□□□□ -2.59
HMGN4O00479 MIR518F-201ENST00000384973 87 ntBASIC-1.13□□□□□ -2.59
HMGN4O00479 SNORA75.4-201ENST00000391278 119 ntBASIC-1.13□□□□□ -2.59
HMGN4O00479 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC-1.13□□□□□ -2.59
HMGN4O00479 AC091144.1-201ENST00000519573 138 ntBASIC-1.13□□□□□ -2.59
HMGN4O00479 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-1.13□□□□□ -2.59
HMGN4O00479 AGGF1P4-201ENST00000568249 801 ntBASIC-1.13□□□□□ -2.59
HMGN4O00479 RNU6-85P-201ENST00000605989 107 ntBASIC-1.13□□□□□ -2.59
HMGN4O00479 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-1.13□□□□□ -2.59
HMGN4O00479 Y_RNA.97-201ENST00000363094 102 ntBASIC-1.14□□□□□ -2.59
HMGN4O00479 Y_RNA.465-201ENST00000384293 102 ntBASIC-1.14□□□□□ -2.59
HMGN4O00479 RNU6-809P-201ENST00000384461 107 ntBASIC-1.14□□□□□ -2.59
HMGN4O00479 SNORD70.1-201ENST00000391007 85 ntBASIC-1.14□□□□□ -2.59
HMGN4O00479 Y_RNA.610-201ENST00000410681 103 ntBASIC-1.14□□□□□ -2.59
HMGN4O00479 Y_RNA.621-201ENST00000411065 96 ntBASIC-1.14□□□□□ -2.59
HMGN4O00479 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC-1.14□□□□□ -2.59
HMGN4O00479 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-1.14□□□□□ -2.59
HMGN4O00479 RNU7-73P-201ENST00000458743 63 ntBASIC-1.14□□□□□ -2.59
HMGN4O00479 RNU6-329P-201ENST00000459618 107 ntBASIC-1.14□□□□□ -2.59
HMGN4O00479 AC091179.3-201ENST00000474761 144 ntBASIC-1.14□□□□□ -2.59
HMGN4O00479 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC-1.14□□□□□ -2.59
HMGN4O00479 RNA5SP66-201ENST00000517178 101 ntBASIC-1.14□□□□□ -2.59
HMGN4O00479 MIR3941-201ENST00000582572 103 ntBASIC-1.14□□□□□ -2.59
HMGN4O00479 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.14□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms