Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 AC073325.2-201ENST00000339545 159 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 MIR340-201ENST00000362125 95 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 SNORA70.4-201ENST00000365509 134 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 NDUFA4P2-201ENST00000489989 244 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 RNU6-168P-201ENST00000516189 101 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 SNORA18.4-201ENST00000516440 124 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 RNU6-1096P-201ENST00000517089 102 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 YPEL5P2-201ENST00000605553 359 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 AC107294.3-201ENST00000609211 526 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 U2.20-201ENST00000613956 192 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 AL121890.5-201ENST00000620848 304 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 FAM35CP-201ENST00000554755 2470 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 Y_RNA.332-201ENST00000365271 113 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 RNU6-546P-201ENST00000383991 107 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 SNORA54-201ENST00000384281 123 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 U6atac.2-201ENST00000408644 118 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 RNA5SP274-201ENST00000410484 108 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 AL513477.1-202ENST00000417061 214 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 RPL23AP83-201ENST00000434984 473 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 RNA5SP236-201ENST00000516169 116 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 RNA5SP380-201ENST00000517190 98 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 IGKV1-22-201ENST00000524313 326 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 JPX_2.1-201ENST00000614161 69 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.16□□□□□ -1.9
AP4E1Q9UPM8 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
AP4E1Q9UPM8 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
AP4E1Q9UPM8 MIR22-201ENST00000362190 85 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 RNA5SP139-201ENST00000364340 117 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 CD24P4-201ENST00000382840 243 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 RNU2-32P-201ENST00000411193 191 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 AC018634.1-201ENST00000437554 401 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 RN7SL75P-201ENST00000461926 281 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 RPS29P21-201ENST00000496272 170 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 AC093259.1-201ENST00000509755 300 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 SCARNA3-201ENST00000517097 143 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 AC007179.3-201ENST00000604976 235 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 AC025166.1-201ENST00000612411 163 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 MIR7157-201ENST00000635801 60 ntBASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.15□□□□□ -1.91
AP4E1Q9UPM8 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 RNA5SP374-201ENST00000362939 125 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 RNU1-23P-201ENST00000363361 144 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 Y_RNA.346-201ENST00000365385 112 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 MIR520G-201ENST00000385064 90 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 MIR95-201ENST00000385072 81 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 RPL21P3-201ENST00000395517 478 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 AC123900.1-201ENST00000420390 96 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 Y_RNA.649-201ENST00000459077 103 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 MRPS17P9-201ENST00000511924 393 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 AC008885.1-201ENST00000514930 301 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 RNU6-365P-201ENST00000517113 106 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 RNU7-128P-201ENST00000517247 62 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 MIR3199-1-201ENST00000582434 88 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 AC073413.2-201ENST00000604332 360 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 AC008555.8-201ENST00000623602 2168 ntBASIC3.14□□□□□ -1.91
AP4E1Q9UPM8 RNU6-525P-201ENST00000363685 104 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 RNU1-96P-201ENST00000364163 162 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 RNA5SP387-201ENST00000364226 106 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 Y_RNA.333-201ENST00000365274 102 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 SNORA1-201ENST00000384107 130 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 MIR218-1-201ENST00000384999 110 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 MIR548A1-201ENST00000385041 97 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 RNU2-48P-201ENST00000410694 191 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 AF228730.3-201ENST00000436691 102 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 RN7SL633P-201ENST00000488974 297 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 MIR3129-201ENST00000581095 76 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 AC007318.2-201ENST00000620999 243 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 AC092435.3-201ENST00000565538 3654 ntBASIC3.13□□□□□ -1.91
AP4E1Q9UPM8 MTND5P18-201ENST00000445624 1801 ntBASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 MIR208A-201ENST00000362287 71 ntBASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 RNU6-743P-201ENST00000364151 106 ntBASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 RN7SKP220-201ENST00000410611 288 ntBASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 AC060773.1-201ENST00000421698 310 ntBASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 HMGN2P34-201ENST00000437647 269 ntBASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 MTATP6P21-201ENST00000440681 189 ntBASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 uc_338.28-201ENST00000612082 187 ntBASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 MIR3651-201ENST00000630427 90 ntBASIC3.12□□□□□ -1.91
AP4E1Q9UPM8 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 200.2 ms