Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC006600.1-201ENST00000572529 153 ntBASIC1.54□□□□□ -2.16
VPS28Q9UK41 PRR13P7-201ENST00000605538 430 ntBASIC1.54□□□□□ -2.16
VPS28Q9UK41 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
VPS28Q9UK41 MIR378A-201ENST00000362177 66 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 MIR320A-201ENST00000385302 82 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 RNU2-54P-201ENST00000410299 190 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 AC096644.2-201ENST00000429278 159 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 AL603825.1-201ENST00000438481 80 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 Y_RNA.675-201ENST00000516389 149 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 RNU6-1291P-201ENST00000516591 104 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.53□□□□□ -2.16
VPS28Q9UK41 AL512310.8-201ENST00000550183 120 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.53□□□□□ -2.16
VPS28Q9UK41 AC055872.1-201ENST00000570978 278 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 MIR4659A-201ENST00000580269 81 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 AL512598.1-201ENST00000610158 273 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 AC240442.1-201ENST00000616055 283 ntBASIC1.53□□□□□ -2.16
VPS28Q9UK41 AP000648.3-201ENST00000623539 4507 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 AL161722.3-201ENST00000605789 2983 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 RNU6-1115P-201ENST00000362490 106 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 SNORA1B-201ENST00000362535 133 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 SNORD26-201ENST00000384147 75 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 RNY3P14-201ENST00000384309 102 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 RNU5A-5P-201ENST00000411054 116 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 BTF3P4-201ENST00000418852 495 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 AL354695.1-201ENST00000427935 228 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 RPS29P23-201ENST00000458635 123 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 RPL39P38-201ENST00000467018 153 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 RPL30P7-201ENST00000479312 323 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 RAB11AP2-201ENST00000545905 639 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 AC093027.1-201ENST00000546698 429 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 AL138825.1-201ENST00000618587 192 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 MIR4272-201ENST00000635924 64 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 U6.92-201ENST00000636464 89 ntBASIC1.52□□□□□ -2.17
VPS28Q9UK41 RNU6-626P-201ENST00000363354 107 ntBASIC1.51□□□□□ -2.17
VPS28Q9UK41 RNU6-20P-201ENST00000384106 107 ntBASIC1.51□□□□□ -2.17
VPS28Q9UK41 RNU6-505P-201ENST00000384427 107 ntBASIC1.51□□□□□ -2.17
VPS28Q9UK41 RNA5SP482-201ENST00000391269 118 ntBASIC1.51□□□□□ -2.17
VPS28Q9UK41 AL031003.1-201ENST00000404229 172 ntBASIC1.51□□□□□ -2.17
VPS28Q9UK41 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.51□□□□□ -2.17
VPS28Q9UK41 HSPE1P13-201ENST00000451143 297 ntBASIC1.51□□□□□ -2.17
VPS28Q9UK41 RNU6-1096P-201ENST00000517089 102 ntBASIC1.51□□□□□ -2.17
VPS28Q9UK41 AL358944.1-201ENST00000528537 144 ntBASIC1.51□□□□□ -2.17
VPS28Q9UK41 AC011476.5-201ENST00000615594 130 ntBASIC1.51□□□□□ -2.17
VPS28Q9UK41 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.51□□□□□ -2.17
VPS28Q9UK41 AC112487.2-201ENST00000637950 304 ntBASIC1.51□□□□□ -2.17
VPS28Q9UK41 Y_RNA.101-201ENST00000363154 102 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 RNU4-13P-201ENST00000364019 141 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 Y_RNA.230-201ENST00000364348 109 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 RNU4-76P-201ENST00000364509 141 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 RNU6-424P-201ENST00000384367 105 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 RPL30P13-201ENST00000418873 348 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS28Q9UK41 SDAD1P3-201ENST00000427380 333 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS28Q9UK41 CHEK2P4-201ENST00000450340 246 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 AL163540.1-201ENST00000485382 386 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 OR9P1P-201ENST00000496431 281 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 RNU6-63P-201ENST00000516690 95 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 RNU1-92P-201ENST00000517017 135 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 AL161670.1-201ENST00000554348 137 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 DNAJC19P9-201ENST00000555084 351 ntBASIC1.5□□□□□ -2.17
VPS28Q9UK41 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
VPS28Q9UK41 Y_RNA.39-201ENST00000362620 98 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 RNU6-708P-201ENST00000384217 107 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 MT-TD-201ENST00000387419 68 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 AC233266.1-201ENST00000454518 96 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 AC092991.1-201ENST00000477176 376 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 MTND3P22-201ENST00000510932 243 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 RNU6-976P-201ENST00000516086 111 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 RNU6-155P-201ENST00000516347 100 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 RNU6-1337P-201ENST00000516525 95 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 RNA5SP168-201ENST00000516642 112 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 CYP3A52P-201ENST00000563326 91 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 MIR4778-201ENST00000577635 80 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 MIR3664-201ENST00000579074 99 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 AC242852.1-201ENST00000612151 96 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 Y_RNA.804-201ENST00000615262 101 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 AC244015.1-201ENST00000622301 99 ntBASIC1.49□□□□□ -2.17
VPS28Q9UK41 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
VPS28Q9UK41 ZNF209P-201ENST00000593450 2304 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 RNU6-136P-201ENST00000384663 107 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
VPS28Q9UK41 RN7SKP51-201ENST00000410781 304 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 AP1B1P2-201ENST00000416196 106 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 AF228730.4-201ENST00000421457 183 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 CALM2P4-201ENST00000430810 426 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.48□□□□□ -2.17
VPS28Q9UK41 RNU7-95P-201ENST00000459222 64 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 AL049830.1-201ENST00000468034 425 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.48□□□□□ -2.17
VPS28Q9UK41 Y_RNA.661-201ENST00000516003 99 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 RN7SKP88-201ENST00000516847 250 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 7SK.8-201ENST00000612110 250 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 7SK.11-201ENST00000615477 250 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 7SK.13-201ENST00000622040 250 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms