Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RNU1-58P-201ENST00000362413 163 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 Y_RNA.83-201ENST00000363005 113 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
TDP1Q9NUW8 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
TDP1Q9NUW8 MTCO2P33-201ENST00000402100 465 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 AL117342.1-201ENST00000404861 406 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.44□□□□□ -2.02
TDP1Q9NUW8 BX510359.4-201ENST00000423750 193 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 AC104332.1-201ENST00000440471 797 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 snoU13.15-201ENST00000459407 104 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 COX6CP14-201ENST00000469580 174 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 RNU6-826P-201ENST00000516827 104 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 RNU7-172P-201ENST00000517125 64 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.44□□□□□ -2.02
TDP1Q9NUW8 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.44□□□□□ -2.02
TDP1Q9NUW8 SNORD14A-201ENST00000606526 91 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.44□□□□□ -2.02
TDP1Q9NUW8 AC068647.2-201ENST00000637380 353 ntBASIC2.44□□□□□ -2.02
TDP1Q9NUW8 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.44□□□□□ -2.02
TDP1Q9NUW8 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
TDP1Q9NUW8 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.43□□□□□ -2.02
TDP1Q9NUW8 AC010154.1-201ENST00000425857 269 ntBASIC2.43□□□□□ -2.02
TDP1Q9NUW8 RNU7-141P-201ENST00000459304 62 ntBASIC2.43□□□□□ -2.02
TDP1Q9NUW8 UBL5P3-201ENST00000475112 231 ntBASIC2.43□□□□□ -2.02
TDP1Q9NUW8 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.43□□□□□ -2.02
TDP1Q9NUW8 AL049779.4-201ENST00000604500 156 ntBASIC2.43□□□□□ -2.02
TDP1Q9NUW8 AC067747.1-201ENST00000608026 250 ntBASIC2.43□□□□□ -2.02
TDP1Q9NUW8 AC013791.1-201ENST00000616619 62 ntBASIC2.43□□□□□ -2.02
TDP1Q9NUW8 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
TDP1Q9NUW8 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
TDP1Q9NUW8 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.42□□□□□ -2.02
TDP1Q9NUW8 RNU1-96P-201ENST00000364163 162 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 Y_RNA.297-201ENST00000364950 91 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 Y_RNA.304-201ENST00000365011 112 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.42□□□□□ -2.02
TDP1Q9NUW8 RNA5SP467-201ENST00000391274 118 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 RNA5SP511-201ENST00000410487 115 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 EBAG9P1-201ENST00000418955 543 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 HSPE1P21-201ENST00000438283 308 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
TDP1Q9NUW8 RPL36AP21-201ENST00000490372 323 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.42□□□□□ -2.02
TDP1Q9NUW8 RNU6-1278P-201ENST00000516130 107 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 IGKV3-31-201ENST00000523109 329 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 AC015720.1-201ENST00000565251 277 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 MIR5194-201ENST00000582634 120 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 MIR5007-201ENST00000583098 95 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 AC022513.1-201ENST00000624512 117 ntBASIC2.42□□□□□ -2.02
TDP1Q9NUW8 AC068700.1-201ENST00000565862 3754 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 MIR411-201ENST00000362239 96 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 RNU6-862P-201ENST00000362804 105 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 SNORA33-201ENST00000363664 130 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 RNU6-899P-201ENST00000363947 107 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 SNORA67.1-201ENST00000364749 141 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 RNU6-1186P-201ENST00000410429 97 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.41□□□□□ -2.02
TDP1Q9NUW8 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.41□□□□□ -2.02
TDP1Q9NUW8 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.41□□□□□ -2.02
TDP1Q9NUW8 RNU7-128P-201ENST00000517247 62 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.41□□□□□ -2.02
TDP1Q9NUW8 AC004486.1-201ENST00000546846 233 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 MIR5692C2-201ENST00000577959 77 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 AC007229.1-201ENST00000590455 412 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 AL365265.1-201ENST00000621045 234 ntBASIC2.41□□□□□ -2.02
TDP1Q9NUW8 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.41□□□□□ -2.02
TDP1Q9NUW8 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.41□□□□□ -2.02
TDP1Q9NUW8 U8.7-201ENST00000364940 136 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 RNU1-52P-201ENST00000384190 164 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 RNU6-136P-201ENST00000384663 107 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 MIR518A2-201ENST00000384966 87 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 HMGN2P39-201ENST00000398005 273 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 AL355497.1-201ENST00000406262 551 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 MIR1283-2-201ENST00000408621 87 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.4□□□□□ -2.03
TDP1Q9NUW8 MTND5P15-201ENST00000434246 349 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 AL162725.1-201ENST00000435405 301 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 AC099677.2-201ENST00000436385 175 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 RPS12P2-201ENST00000439728 269 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.4□□□□□ -2.03
TDP1Q9NUW8 AC117454.1-201ENST00000491120 168 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 RNU7-99P-201ENST00000516271 62 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 RNU7-115P-201ENST00000516433 55 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 Y_RNA.700-201ENST00000516806 100 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.4□□□□□ -2.03
TDP1Q9NUW8 AC005972.2-201ENST00000604690 348 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 AL359075.3-201ENST00000613288 217 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 MIR548AY-201ENST00000617669 107 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 MIR6873-201ENST00000622788 63 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 MIR203B-201ENST00000636080 86 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 U6.108-201ENST00000637764 58 ntBASIC2.4□□□□□ -2.03
TDP1Q9NUW8 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.39□□□□□ -2.03
TDP1Q9NUW8 AC245060.5-201ENST00000610778 3293 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 SNORA3A-201ENST00000364113 130 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 Y_RNA.262-201ENST00000364641 102 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 RNU6-1323P-201ENST00000384025 107 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 Y_RNA.785-201ENST00000384290 109 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 RNU6-376P-201ENST00000384731 106 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 MIR597-201ENST00000384968 97 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 MIR504-201ENST00000385065 83 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms