Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC127459.3-201ENST00000624328 466 ntBASIC1.25□□□□□ -2.21
DDX28Q9NUL7 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.25□□□□□ -2.21
DDX28Q9NUL7 AC091812.1-201ENST00000432235 1948 ntBASIC1.25□□□□□ -2.21
DDX28Q9NUL7 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
DDX28Q9NUL7 RNU6-490P-201ENST00000362985 107 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 Y_RNA.116-201ENST00000363292 103 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 Y_RNA.355-201ENST00000365462 98 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 Y_RNA.384-201ENST00000383909 102 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 RNU6-376P-201ENST00000384731 106 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 Y_RNA.605-201ENST00000410577 105 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 AC015922.2-201ENST00000435593 184 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 STAG3L5P-204ENST00000443759 179 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.24□□□□□ -2.21
DDX28Q9NUL7 RNU6-277P-201ENST00000516272 106 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 AL512310.8-201ENST00000550183 120 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 MIR4421-201ENST00000578133 69 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 AC005730.3-201ENST00000583067 366 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 SNORD3E-202ENST00000627253 216 ntBASIC1.24□□□□□ -2.21
DDX28Q9NUL7 SNORA72.1-201ENST00000363485 129 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 Y_RNA.265-201ENST00000364677 108 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 RNU6-392P-201ENST00000364926 101 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 RNY3P4-201ENST00000384428 101 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 MIR660-201ENST00000385235 97 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.23□□□□□ -2.21
DDX28Q9NUL7 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.23□□□□□ -2.21
DDX28Q9NUL7 AC099799.1-201ENST00000439809 192 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 FCF1P4-201ENST00000448326 183 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 RPL39P38-201ENST00000467018 153 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 AC091021.1-201ENST00000468051 388 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 AC105758.1-201ENST00000506038 399 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 RN7SKP179-201ENST00000516126 217 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.23□□□□□ -2.21
DDX28Q9NUL7 MIR3664-201ENST00000579074 99 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 AC004467.1-201ENST00000615678 330 ntBASIC1.23□□□□□ -2.21
DDX28Q9NUL7 Y_RNA.259-201ENST00000364619 101 ntBASIC1.22□□□□□ -2.21
DDX28Q9NUL7 Y_RNA.267-201ENST00000364679 109 ntBASIC1.22□□□□□ -2.21
DDX28Q9NUL7 RNU6-117P-201ENST00000365415 107 ntBASIC1.22□□□□□ -2.21
DDX28Q9NUL7 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.22□□□□□ -2.21
DDX28Q9NUL7 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.22□□□□□ -2.21
DDX28Q9NUL7 RNU7-169P-201ENST00000459456 61 ntBASIC1.22□□□□□ -2.21
DDX28Q9NUL7 RNU6-911P-201ENST00000516523 104 ntBASIC1.22□□□□□ -2.21
DDX28Q9NUL7 RNU2-56P-201ENST00000516826 190 ntBASIC1.22□□□□□ -2.21
DDX28Q9NUL7 AP002004.2-201ENST00000531656 154 ntBASIC1.22□□□□□ -2.21
DDX28Q9NUL7 AC019288.1-201ENST00000557918 224 ntBASIC1.22□□□□□ -2.21
DDX28Q9NUL7 CYP3A52P-201ENST00000563326 91 ntBASIC1.22□□□□□ -2.21
DDX28Q9NUL7 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.22□□□□□ -2.21
DDX28Q9NUL7 MTND4LP32-201ENST00000636111 270 ntBASIC1.22□□□□□ -2.21
DDX28Q9NUL7 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.21□□□□□ -2.21
DDX28Q9NUL7 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
DDX28Q9NUL7 RNU6-961P-201ENST00000363893 105 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.314-201ENST00000365114 102 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.21□□□□□ -2.22
DDX28Q9NUL7 RNU6-926P-201ENST00000384075 107 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 MIR520G-201ENST00000385064 90 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 MIR618-201ENST00000385287 98 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
DDX28Q9NUL7 SNRPGP13-201ENST00000442212 177 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 snoU13.18-201ENST00000459483 104 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.718-201ENST00000517110 102 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 RNU2-12P-201ENST00000517216 168 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 AC023442.1-201ENST00000531247 422 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 AC006380.1-201ENST00000603598 186 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 AL132765.2-201ENST00000610812 351 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 MIR6078-201ENST00000611069 100 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 MIR6504-201ENST00000613520 61 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 AL353770.2-201ENST00000620024 78 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 MIR8065-201ENST00000620577 100 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 AC091895.1-201ENST00000624494 256 ntBASIC1.21□□□□□ -2.22
DDX28Q9NUL7 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.21□□□□□ -2.22
DDX28Q9NUL7 SNORA1B-201ENST00000362535 133 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.124-201ENST00000363339 93 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.796-201ENST00000364268 102 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.799-201ENST00000364992 102 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.361-201ENST00000365515 120 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 SNORD116-29-201ENST00000384516 83 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 MIR559-201ENST00000385188 96 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 MIR758-201ENST00000390227 88 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 RNY4P36-201ENST00000391116 96 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 RNA5SP482-201ENST00000391269 118 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 RNU5A-5P-201ENST00000411054 116 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.2□□□□□ -2.22
DDX28Q9NUL7 MRPS18CP6-201ENST00000423587 223 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 HMGN1P7-201ENST00000491722 313 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 FGF7P4-201ENST00000509595 295 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 SNORA70.12-201ENST00000516084 153 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 RNA5SP168-201ENST00000516642 112 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 AL358944.1-201ENST00000528537 144 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 AL513534.2-201ENST00000603836 250 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 RBM11P1-201ENST00000604951 799 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 U2.1-201ENST00000618978 145 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 MIR1302-1-201ENST00000637932 143 ntBASIC1.2□□□□□ -2.22
DDX28Q9NUL7 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
DDX28Q9NUL7 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
DDX28Q9NUL7 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.19□□□□□ -2.22
DDX28Q9NUL7 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.19□□□□□ -2.22
DDX28Q9NUL7 SNORD115-30-201ENST00000364117 82 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 RNY3P11-201ENST00000364153 102 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 RNU4-76P-201ENST00000364509 141 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 SNORD78.2-201ENST00000391076 69 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 238.8 ms