Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RN7SKP284-201ENST00000411002 343 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 AL162725.1-201ENST00000435405 301 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-1278P-201ENST00000516130 107 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 AC127455.1-201ENST00000565496 145 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 MIR338-201ENST00000636369 67 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 SNORD115-3-201ENST00000363100 82 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 SNORA33-201ENST00000363664 130 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 RNU1-91P-201ENST00000364746 163 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-136P-201ENST00000384663 107 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 SNORA8.3-201ENST00000384679 139 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 MIR626-201ENST00000385032 94 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 RNU2-2P-201ENST00000410396 191 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 SNORA36B-201ENST00000410438 131 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 SUMO1P3-201ENST00000439961 304 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 AC026436.1-201ENST00000510537 270 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 RPL23AP94-201ENST00000512518 302 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-1146P-201ENST00000516282 102 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 RNU7-128P-201ENST00000517247 62 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 AC021269.2-201ENST00000532318 330 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 AC026271.5-201ENST00000577873 130 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 MIR4298-201ENST00000584380 73 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 RNU2-4P-201ENST00000606190 192 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 Y_RNA.802-201ENST00000614892 130 ntBASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
PCIF1Q9H4Z3 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 MIR21-201ENST00000362134 72 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 Y_RNA.7-201ENST00000362352 102 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 RNA5SP493-201ENST00000364115 91 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 snoU2_19.4-201ENST00000364329 80 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-376P-201ENST00000384731 106 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 MIR526A2-201ENST00000390198 65 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 AL117342.1-201ENST00000404861 406 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-1186P-201ENST00000410429 97 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 RNA5SP492-201ENST00000411330 114 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 EBAG9P1-201ENST00000418955 543 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 AC010154.1-201ENST00000425857 269 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 ATP5J2P3-201ENST00000451550 258 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 YWHAEP4-201ENST00000505390 198 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 RPPH1-2P-201ENST00000516688 293 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 MIR3169-201ENST00000578032 83 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 POLR3GP1-201ENST00000594073 261 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 AC046143.2-201ENST00000609789 160 ntBASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.63□□□□□ -1.99
PCIF1Q9H4Z3 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 RNA5SP289-201ENST00000362332 137 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 Y_RNA.24-201ENST00000362508 103 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 RNU1-96P-201ENST00000364163 162 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 Y_RNA.238-201ENST00000364441 102 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 Y_RNA.240-201ENST00000364469 95 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 RNU1-51P-201ENST00000365345 176 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-969P-201ENST00000383900 105 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 RNA5SP467-201ENST00000391274 118 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 RPS12P2-201ENST00000439728 269 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 RPS4XP11-201ENST00000446897 772 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 AC245102.2-201ENST00000448956 180 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 RN7SL636P-201ENST00000497504 294 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 RNU7-116P-201ENST00000516940 62 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 AC004486.1-201ENST00000546846 233 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 AC073413.2-201ENST00000604332 360 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 Z82195.2-201ENST00000612348 18351 ntBASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-23P-201ENST00000363283 107 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 SNORA38-201ENST00000363946 132 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 RNU4-13P-201ENST00000364019 141 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 SNORD114-30-201ENST00000364448 72 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 DEFA7P-201ENST00000382676 285 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-144P-201ENST00000383951 107 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-383P-201ENST00000410864 94 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 AL513328.1-201ENST00000446460 224 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 RPL23AP54-201ENST00000495129 419 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 Y_RNA.662-201ENST00000516028 97 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 MIR3126-201ENST00000577443 74 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 AL031274.2-201ENST00000599419 203 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 AC022513.1-201ENST00000624512 117 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 U6.106-201ENST00000636360 105 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 U6.108-201ENST00000637764 58 ntBASIC2.61□□□□□ -1.99
PCIF1Q9H4Z3 MIR449A-201ENST00000362113 91 ntBASIC2.6□□□□□ -1.99
PCIF1Q9H4Z3 MIR367-201ENST00000362299 68 ntBASIC2.6□□□□□ -1.99
PCIF1Q9H4Z3 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.6□□□□□ -1.99
PCIF1Q9H4Z3 AC234781.5-201ENST00000508429 271 ntBASIC2.6□□□□□ -1.99
PCIF1Q9H4Z3 RN7SKP164-201ENST00000516138 266 ntBASIC2.6□□□□□ -1.99
PCIF1Q9H4Z3 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.6□□□□□ -1.99
PCIF1Q9H4Z3 MIR4724-201ENST00000579485 89 ntBASIC2.6□□□□□ -1.99
PCIF1Q9H4Z3 AC007229.1-201ENST00000590455 412 ntBASIC2.6□□□□□ -1.99
PCIF1Q9H4Z3 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.6□□□□□ -1.99
PCIF1Q9H4Z3 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
PCIF1Q9H4Z3 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 133.8 ms