Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AC133485.4-201ENST00000561835 220 ntBASIC3.25□□□□□ -1.89
TRIM56Q9BRZ2 AC138907.4-201ENST00000570107 226 ntBASIC3.25□□□□□ -1.89
TRIM56Q9BRZ2 MIR3121-201ENST00000579680 77 ntBASIC3.25□□□□□ -1.89
TRIM56Q9BRZ2 MIR2682-201ENST00000580305 110 ntBASIC3.25□□□□□ -1.89
TRIM56Q9BRZ2 YPEL5P2-201ENST00000605553 359 ntBASIC3.25□□□□□ -1.89
TRIM56Q9BRZ2 U4atac.1-201ENST00000618345 95 ntBASIC3.25□□□□□ -1.89
TRIM56Q9BRZ2 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
TRIM56Q9BRZ2 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 SNORA63.4-201ENST00000362763 126 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 Y_RNA.91-201ENST00000363042 107 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 RNU6-1209P-201ENST00000363655 107 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 Y_RNA.796-201ENST00000364268 102 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 Y_RNA.799-201ENST00000364992 102 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 RNU6-1138P-201ENST00000365359 106 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 MIR562-201ENST00000384894 95 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 MIR520G-201ENST00000385064 90 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 AL603914.1-201ENST00000401964 204 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 AC025750.2-201ENST00000442609 450 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 AC006483.1-201ENST00000487308 313 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 RNA5SP217-201ENST00000515959 91 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 MIR3117-201ENST00000584034 78 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 AL391516.1-201ENST00000554380 2449 ntBASIC3.24□□□□□ -1.89
TRIM56Q9BRZ2 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 Y_RNA.114-201ENST00000363265 113 ntBASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 RNU6-647P-201ENST00000364243 107 ntBASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 SNORA48.2-201ENST00000390926 124 ntBASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 RPL21P3-201ENST00000395517 478 ntBASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 MLLT10P1-201ENST00000418346 262 ntBASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 RPL21P10-201ENST00000463521 490 ntBASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 RNU5E-3P-201ENST00000515913 68 ntBASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 RNU7-149P-201ENST00000516739 59 ntBASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 Pinc.1-201ENST00000616452 154 ntBASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
TRIM56Q9BRZ2 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
TRIM56Q9BRZ2 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
TRIM56Q9BRZ2 RNU6-991P-201ENST00000516168 107 ntBASIC3.22□□□□□ -1.89
TRIM56Q9BRZ2 SNORA18.4-201ENST00000516440 124 ntBASIC3.22□□□□□ -1.89
TRIM56Q9BRZ2 RNU6-1061P-201ENST00000516530 99 ntBASIC3.22□□□□□ -1.89
TRIM56Q9BRZ2 Y_RNA.690-201ENST00000516603 95 ntBASIC3.22□□□□□ -1.89
TRIM56Q9BRZ2 uc_338.25-201ENST00000613756 156 ntBASIC3.22□□□□□ -1.89
TRIM56Q9BRZ2 U6.73-201ENST00000619194 103 ntBASIC3.22□□□□□ -1.89
TRIM56Q9BRZ2 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
TRIM56Q9BRZ2 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
TRIM56Q9BRZ2 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 Y_RNA.99-201ENST00000363138 105 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 RNU6-743P-201ENST00000364151 106 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 RNU6-755P-201ENST00000364400 103 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 MIR128-1-201ENST00000384921 82 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 SNORA26.7-201ENST00000391288 122 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 AL513477.1-202ENST00000417061 214 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 AL353689.1-201ENST00000438895 199 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 RNU6-589P-201ENST00000516485 107 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 RNU6-1096P-201ENST00000517089 102 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 AL670379.3-201ENST00000605040 251 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 U2.20-201ENST00000613956 192 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 SNORA50A-202ENST00000629536 136 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 Z83843.1-201ENST00000604070 3685 ntBASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
TRIM56Q9BRZ2 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 MIR624-201ENST00000385217 97 ntBASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 SNORA40.5-201ENST00000391061 128 ntBASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 RNA5SP127-201ENST00000411051 133 ntBASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 RPS15AP28-201ENST00000435088 386 ntBASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 AC091826.1-201ENST00000514065 313 ntBASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 RNU6-365P-201ENST00000517113 106 ntBASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 RNU6-667P-201ENST00000517186 102 ntBASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 AL365205.2-201ENST00000594586 68 ntBASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 AL353149.1-201ENST00000610667 244 ntBASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 MIR8057-201ENST00000620957 69 ntBASIC3.2□□□□□ -1.9
TRIM56Q9BRZ2 SNORA38.1-201ENST00000364172 131 ntBASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 Y_RNA.621-201ENST00000411065 96 ntBASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 HMGN2P34-201ENST00000437647 269 ntBASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 MTATP6P21-201ENST00000440681 189 ntBASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 RNU1-131P-201ENST00000458943 161 ntBASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 RN7SL75P-201ENST00000461926 281 ntBASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 AC018868.1-201ENST00000491307 315 ntBASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 AL035425.3-201ENST00000564206 4996 ntBASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 AC008264.2-201ENST00000610193 3731 ntBASIC3.19□□□□□ -1.9
TRIM56Q9BRZ2 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 180.4 ms