Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 AC133104.2-201ENST00000615272 193 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 MIR8065-201ENST00000620577 100 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 AC099654.14-201ENST00000638599 341 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-117P-201ENST00000365415 107 ntBASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-890P-201ENST00000384121 107 ntBASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-424P-201ENST00000384367 105 ntBASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 RBMX2P4-201ENST00000441256 376 ntBASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 AC144568.1-201ENST00000520139 137 ntBASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 AC127459.3-201ENST00000624328 466 ntBASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.01□□□□□ -2.25
KLHDC3Q9BQ90 SNORA1B-201ENST00000362535 133 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-199P-201ENST00000362954 107 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 Y_RNA.267-201ENST00000364679 109 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 Y_RNA.361-201ENST00000365515 120 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 RNY3P4-201ENST00000384428 101 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 RNA5SP482-201ENST00000391269 118 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 RNU5A-5P-201ENST00000411054 116 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 AC138393.2-201ENST00000414742 246 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 AL591704.2-201ENST00000421658 181 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1□□□□□ -2.25
KLHDC3Q9BQ90 FCF1P4-201ENST00000448326 183 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 Y_RNA.653-201ENST00000459091 95 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 OR2A41P-201ENST00000473586 105 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 OR9P1P-201ENST00000496431 281 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1□□□□□ -2.25
KLHDC3Q9BQ90 RN7SKP179-201ENST00000516126 217 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-559P-201ENST00000516151 98 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 RNU7-40P-201ENST00000516397 64 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 AL358944.1-201ENST00000528537 144 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 HSPE1P19-201ENST00000603327 295 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 AL513534.2-201ENST00000603836 250 ntBASIC1□□□□□ -2.25
KLHDC3Q9BQ90 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1□□□□□ -2.25
KLHDC3Q9BQ90 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 RNA5SP327-201ENST00000362494 101 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 Y_RNA.124-201ENST00000363339 93 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-392P-201ENST00000364926 101 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 MIR1285-1-201ENST00000408593 84 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-408P-201ENST00000515910 100 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-470P-201ENST00000515954 104 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-120P-201ENST00000516077 103 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 RNA5SP168-201ENST00000516642 112 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-165P-201ENST00000517170 99 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 RNU2-12P-201ENST00000517216 168 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 MIR4778-201ENST00000577635 80 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 SNORD114-21-201ENST00000606412 72 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 AL355073.2-201ENST00000612106 557 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 AC106754.2-201ENST00000623006 233 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 AC091895.1-201ENST00000624494 256 ntBASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
KLHDC3Q9BQ90 SNORD114-27-201ENST00000363766 70 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 SNORD115-30-201ENST00000364117 82 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-1297P-201ENST00000384415 104 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 MIR653-201ENST00000385279 96 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 CALM2P4-201ENST00000430810 426 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 RPL30P15-201ENST00000457129 321 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 AC105758.1-201ENST00000506038 399 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 TRMT112P2-201ENST00000512910 132 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-1053P-201ENST00000515930 101 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 SNORA70.12-201ENST00000516084 153 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-1291P-201ENST00000516591 104 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 MIR6078-201ENST00000611069 100 ntBASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.98□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-961P-201ENST00000363893 105 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 SNORA22-201ENST00000383907 134 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 SNORA22C-201ENST00000384614 134 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 SNORD78.2-201ENST00000391076 69 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 U8.16-201ENST00000391279 133 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 MRPL35P3-201ENST00000421557 364 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 AC099799.1-201ENST00000439809 192 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 HSPE1P13-201ENST00000451143 297 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 MTCO3P10-201ENST00000455912 772 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 COX6CP14-201ENST00000469580 174 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-911P-201ENST00000516523 104 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-922P-201ENST00000516753 99 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-1096P-201ENST00000517089 102 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 AC023442.1-201ENST00000531247 422 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 AC090049.2-201ENST00000550377 109 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 AC006380.1-201ENST00000603598 186 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 GHRLOS.1-201ENST00000610995 70 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 AC004467.1-201ENST00000615678 330 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms