Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 Y_RNA.276-201ENST00000364732 109 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 Y_RNA.331-201ENST00000365267 102 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 SNORA20B-201ENST00000384220 132 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 MIR517C-201ENST00000385103 95 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 AL117342.1-201ENST00000404861 406 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 RNU2-54P-201ENST00000410299 190 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 RNA5SP501-201ENST00000410990 112 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 OOSP1P1-201ENST00000423265 274 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 AL354695.1-201ENST00000427935 228 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 HMGN2P34-201ENST00000437647 269 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 RNU1-131P-201ENST00000458943 161 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 RNU6-570P-201ENST00000517051 105 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 AP003733.2-201ENST00000529409 171 ntBASIC1.67□□□□□ -2.14
USP28Q96RU2 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.67□□□□□ -2.14
USP28Q96RU2 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.66□□□□□ -2.14
USP28Q96RU2 Y_RNA.16-201ENST00000362421 102 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 RNU6-862P-201ENST00000362804 105 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 Y_RNA.230-201ENST00000364348 109 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 Y_RNA.243-201ENST00000364481 109 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 SNORD63-201ENST00000384262 68 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 Y_RNA.462-201ENST00000384268 102 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 Y_RNA.541-201ENST00000384640 113 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 RNU6-417P-201ENST00000384712 107 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 Y_RNA.574-201ENST00000384766 95 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 MIR30A-201ENST00000385092 71 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 snosnR66.1-201ENST00000391095 99 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 AL121890.1-201ENST00000435457 205 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 AL731563.1-201ENST00000442202 214 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 AC074290.1-201ENST00000448883 135 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 ATP5J2P3-201ENST00000451550 258 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 YWHAEP4-201ENST00000505390 198 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.66□□□□□ -2.14
USP28Q96RU2 RNU6-496P-201ENST00000516145 99 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 RNVU1-2-201ENST00000516326 135 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 RNU2-34P-201ENST00000516534 121 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 Y_RNA.713-201ENST00000517013 96 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 AC023157.2-201ENST00000540596 141 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 AL645939.4-201ENST00000604495 135 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 AC011373.1-201ENST00000607270 237 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.66□□□□□ -2.14
USP28Q96RU2 MIR338-201ENST00000636369 67 ntBASIC1.66□□□□□ -2.14
USP28Q96RU2 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
USP28Q96RU2 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
USP28Q96RU2 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
USP28Q96RU2 MIR126-201ENST00000362291 85 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 Y_RNA.152-201ENST00000363578 100 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 RNU6-60P-201ENST00000364792 103 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 RNU6-1240P-201ENST00000365155 104 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 Y_RNA.396-201ENST00000383949 103 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 RNU6-1310P-201ENST00000384153 107 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 MT-TW-201ENST00000387382 68 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
USP28Q96RU2 RNA5SP467-201ENST00000391274 118 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 AL031003.1-201ENST00000404229 172 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 MTND3P2-201ENST00000438452 342 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.65□□□□□ -2.15
USP28Q96RU2 MRPS10P1-201ENST00000448483 130 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 RNU1-98P-201ENST00000458992 160 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.65□□□□□ -2.15
USP28Q96RU2 RN7SL429P-201ENST00000479090 223 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 RN7SL489P-201ENST00000486185 223 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 RN7SL327P-201ENST00000488659 223 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 RNU6-436P-201ENST00000516171 114 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.65□□□□□ -2.15
USP28Q96RU2 AC015720.1-201ENST00000565251 277 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 DEFB117-201ENST00000602356 141 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 AC005828.6-201ENST00000606610 232 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 RN7SL853P-201ENST00000617250 223 ntBASIC1.65□□□□□ -2.15
USP28Q96RU2 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.65□□□□□ -2.15
USP28Q96RU2 snoU2-30.2-201ENST00000362805 70 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 Y_RNA.84-201ENST00000363011 104 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 Y_RNA.172-201ENST00000363765 102 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 RNU6-324P-201ENST00000363957 106 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 Y_RNA.329-201ENST00000365209 107 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 Y_RNA.376-201ENST00000365638 108 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 RNU6-472P-201ENST00000384299 107 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 Y_RNA.483-201ENST00000384380 101 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 RNU6-21P-201ENST00000384710 107 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 Y_RNA.581-201ENST00000391017 97 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 RNU5A-5P-201ENST00000411054 116 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 MTCYBP9-201ENST00000431021 303 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 AC005042.3-201ENST00000453230 174 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 RNU6-970P-201ENST00000516312 107 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.64□□□□□ -2.15
USP28Q96RU2 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.64□□□□□ -2.15
USP28Q96RU2 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.64□□□□□ -2.15
USP28Q96RU2 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.64□□□□□ -2.15
USP28Q96RU2 PRR13P7-201ENST00000605538 430 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 AL162730.1-201ENST00000605734 292 ntBASIC1.64□□□□□ -2.15
USP28Q96RU2 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
USP28Q96RU2 AP000648.3-201ENST00000623539 4507 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 RNU1-42P-201ENST00000364033 160 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 RNU6-407P-201ENST00000365280 104 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 Y_RNA.361-201ENST00000365515 120 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 Y_RNA.418-201ENST00000384029 102 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 AC008134.1-201ENST00000420943 193 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 AL135790.2-201ENST00000437701 267 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 snoU13.26-201ENST00000459452 105 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 MTCO2P24-201ENST00000515611 426 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms