Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.19□□□□□ -2.22
VPS39Q96JC1 RNY4P36-201ENST00000391116 96 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 MRPL42P3-201ENST00000401492 326 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 RNA5SP475-201ENST00000410568 110 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 AL603825.1-201ENST00000438481 80 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 AC091021.1-201ENST00000468051 388 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 AC074133.1-201ENST00000515696 183 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.19□□□□□ -2.22
VPS39Q96JC1 snoU13.31-201ENST00000607291 104 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 AC004467.1-201ENST00000615678 330 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 AL353770.2-201ENST00000620024 78 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 AC104985.2-201ENST00000620598 500 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
VPS39Q96JC1 Y_RNA.101-201ENST00000363154 102 ntBASIC1.18□□□□□ -2.22
VPS39Q96JC1 MIR625-201ENST00000385047 85 ntBASIC1.18□□□□□ -2.22
VPS39Q96JC1 AL163540.1-201ENST00000485382 386 ntBASIC1.18□□□□□ -2.22
VPS39Q96JC1 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.18□□□□□ -2.22
VPS39Q96JC1 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.18□□□□□ -2.22
VPS39Q96JC1 MIR4801-201ENST00000582704 82 ntBASIC1.18□□□□□ -2.22
VPS39Q96JC1 AC080078.3-201ENST00000605407 463 ntBASIC1.18□□□□□ -2.22
VPS39Q96JC1 AL050343.2-201ENST00000607338 280 ntBASIC1.18□□□□□ -2.22
VPS39Q96JC1 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.18□□□□□ -2.22
VPS39Q96JC1 AL157834.3-201ENST00000615543 103 ntBASIC1.18□□□□□ -2.22
VPS39Q96JC1 AC018630.2-201ENST00000534866 2403 ntBASIC1.18□□□□□ -2.22
VPS39Q96JC1 Y_RNA.267-201ENST00000364679 109 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 SNORA25-201ENST00000384384 134 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 Y_RNA.496-201ENST00000384444 101 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 Y_RNA.605-201ENST00000410577 105 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 AL591704.2-201ENST00000421658 181 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 RPEP5-201ENST00000441137 268 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 Y_RNA.638-201ENST00000459374 113 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 AC108729.3-201ENST00000513484 108 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 RNU6-1291P-201ENST00000516591 104 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 CYCSP23-201ENST00000519781 313 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.17□□□□□ -2.22
VPS39Q96JC1 MIR4778-201ENST00000577635 80 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 MIR548S-201ENST00000581352 82 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 BX284668.6-201ENST00000606899 438 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 AC106754.2-201ENST00000623006 233 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 MIR6079-201ENST00000635807 62 ntBASIC1.17□□□□□ -2.22
VPS39Q96JC1 AC005592.1-201ENST00000566527 1640 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 MIR410-201ENST00000362222 80 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 Y_RNA.70-201ENST00000362886 110 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 Y_RNA.172-201ENST00000363765 102 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 Y_RNA.384-201ENST00000383909 102 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 Y_RNA.463-201ENST00000384271 102 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 MIR1285-1-201ENST00000408593 84 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.16□□□□□ -2.22
VPS39Q96JC1 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.16□□□□□ -2.22
VPS39Q96JC1 AL137792.2-201ENST00000443484 235 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 STAG3L5P-204ENST00000443759 179 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 SNORD116-28-201ENST00000516123 91 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.16□□□□□ -2.22
VPS39Q96JC1 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.16□□□□□ -2.22
VPS39Q96JC1 AC091178.2-201ENST00000584401 117 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 HSPE1P19-201ENST00000603327 295 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 RBM11P1-201ENST00000604951 799 ntBASIC1.16□□□□□ -2.22
VPS39Q96JC1 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.22
VPS39Q96JC1 Y_RNA.80-201ENST00000362996 102 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 RNU1-124P-201ENST00000363861 145 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 Y_RNA.243-201ENST00000364481 109 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 RNU6-1040P-201ENST00000383974 107 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 Y_RNA.485-201ENST00000384395 102 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
VPS39Q96JC1 RN7SKP200-201ENST00000410564 320 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 AC093850.1-201ENST00000454121 251 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 RPS23P4-201ENST00000487908 423 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 AL022345.2-201ENST00000606307 135 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 AC005828.6-201ENST00000606610 232 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 U2.1-201ENST00000618978 145 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 AC027335.2-201ENST00000624030 375 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 AC006435.5-201ENST00000624486 112 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 AC068647.2-201ENST00000637380 353 ntBASIC1.15□□□□□ -2.23
VPS39Q96JC1 AL391987.6-201ENST00000305671 199 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 SNORA1B-201ENST00000362535 133 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 RNU6-490P-201ENST00000362985 107 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 RNU6-626P-201ENST00000363354 107 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 SNORD115-30-201ENST00000364117 82 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 Y_RNA.338-201ENST00000365320 114 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 RNU6-117P-201ENST00000365415 107 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 RNU6-20P-201ENST00000384106 107 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 RNU6-376P-201ENST00000384731 106 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 RNA5SP511-201ENST00000410487 115 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 RNU6-1199P-201ENST00000411249 104 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 RPL23AP36-201ENST00000413895 458 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 MTCO3P19-201ENST00000415864 321 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 CALM2P4-201ENST00000430810 426 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 AC092473.1-201ENST00000441098 221 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 DYNLT3P2-201ENST00000442517 295 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 AC093019.1-201ENST00000443135 252 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 MTND5P20-201ENST00000448677 143 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 SNORD19B-201ENST00000459623 84 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 RPL39P38-201ENST00000467018 153 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.14□□□□□ -2.23
VPS39Q96JC1 FGF7P4-201ENST00000509595 295 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 RNU2-12P-201ENST00000517216 168 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 RNU6-1116P-201ENST00000517269 99 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 AC144568.1-201ENST00000520139 137 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 167.3 ms