Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC080100.1-201ENST00000624239 5356 ntBASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.229-201ENST00000364347 113 ntBASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.233-201ENST00000364407 101 ntBASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.253-201ENST00000364562 112 ntBASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 SNORA5A-201ENST00000384111 134 ntBASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 RNY3P5-201ENST00000384127 102 ntBASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 RN7SKP200-201ENST00000410564 320 ntBASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 AL606517.2-201ENST00000442855 241 ntBASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 MIR3605-201ENST00000583214 100 ntBASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 MIR8054-201ENST00000620877 86 ntBASIC2.32□□□□□ -2.04
CLRN3Q8NCR9 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
CLRN3Q8NCR9 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.265-201ENST00000364677 108 ntBASIC2.31□□□□□ -2.04
CLRN3Q8NCR9 RNU6-440P-201ENST00000390882 105 ntBASIC2.31□□□□□ -2.04
CLRN3Q8NCR9 AL158823.1-201ENST00000418441 478 ntBASIC2.31□□□□□ -2.04
CLRN3Q8NCR9 AC023632.4-201ENST00000517783 191 ntBASIC2.31□□□□□ -2.04
CLRN3Q8NCR9 RPL23AP91-201ENST00000569211 455 ntBASIC2.31□□□□□ -2.04
CLRN3Q8NCR9 AL121772.2-201ENST00000614331 297 ntBASIC2.31□□□□□ -2.04
CLRN3Q8NCR9 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.31□□□□□ -2.04
CLRN3Q8NCR9 FTX_2.1-201ENST00000618816 94 ntBASIC2.31□□□□□ -2.04
CLRN3Q8NCR9 AC009093.8-201ENST00000641769 292 ntBASIC2.31□□□□□ -2.04
CLRN3Q8NCR9 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 RNU6-1209P-201ENST00000363655 107 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.796-201ENST00000364268 102 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 snoU2_19.4-201ENST00000364329 80 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.242-201ENST00000364473 110 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.270-201ENST00000364693 104 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.799-201ENST00000364992 102 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 RNU6-296P-201ENST00000384608 107 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 RNU6-1228P-201ENST00000391014 107 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 RNU2-2P-201ENST00000410396 191 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 AC026403.1-201ENST00000518938 295 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 IGLV3-17-201ENST00000519099 244 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 MIR2682-201ENST00000580305 110 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 MIR4744-201ENST00000581563 82 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 AC008739.3-201ENST00000603262 127 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 RNU2-4P-201ENST00000606190 192 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 AL021707.8-201ENST00000609428 183 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 MIR6895-201ENST00000613497 78 ntBASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
CLRN3Q8NCR9 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.111-201ENST00000363248 100 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 RNA5SP212-201ENST00000391223 107 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 AL034345.1-201ENST00000407768 123 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 RNA5SP100-201ENST00000410903 110 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 RNA5SP59-201ENST00000410922 110 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 RPS29P4-201ENST00000414733 161 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 SNRPGP10-201ENST00000432323 225 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 AC105272.1-201ENST00000438604 198 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 AC245047.8-201ENST00000456455 284 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 RPL23AP63-201ENST00000498752 471 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 AC107393.1-201ENST00000512403 346 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.797-201ENST00000515977 94 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 IGKV2-26-201ENST00000518305 343 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 AC087685.1-201ENST00000587507 141 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 ZNF702P-202ENST00000434269 1966 ntBASIC2.29□□□□□ -2.04
CLRN3Q8NCR9 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 MIR126-201ENST00000362291 85 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 RNA5SP50-201ENST00000363731 107 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.555-201ENST00000384673 110 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.572-201ENST00000384757 98 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 MIR449B-201ENST00000384995 97 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 RNU6ATAC34P-201ENST00000408879 121 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 STAG3L5P-204ENST00000443759 179 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 RNA5SP57-201ENST00000459463 123 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 RN7SL542P-201ENST00000467147 294 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 RNA5SP437-201ENST00000517249 129 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 AC091544.4-201ENST00000555268 342 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 AC005000.2-201ENST00000605468 310 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 AL591926.4-201ENST00000616895 298 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 AC007318.2-201ENST00000620999 243 ntBASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.75-201ENST00000362927 97 ntBASIC2.27□□□□□ -2.05
CLRN3Q8NCR9 Y_RNA.182-201ENST00000363880 111 ntBASIC2.27□□□□□ -2.05
CLRN3Q8NCR9 MIR512-1-201ENST00000384913 84 ntBASIC2.27□□□□□ -2.05
CLRN3Q8NCR9 RNU6-131P-201ENST00000391144 107 ntBASIC2.27□□□□□ -2.05
CLRN3Q8NCR9 MIR1278-201ENST00000408753 81 ntBASIC2.27□□□□□ -2.05
CLRN3Q8NCR9 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.27□□□□□ -2.05
CLRN3Q8NCR9 SNORD11-201ENST00000459124 84 ntBASIC2.27□□□□□ -2.05
CLRN3Q8NCR9 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.27□□□□□ -2.05
CLRN3Q8NCR9 Y_RNA.662-201ENST00000516028 97 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms