Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.61□□□□□ -2.15
NPHP3Q7Z494 RNU6-408P-201ENST00000515910 100 ntBASIC1.61□□□□□ -2.15
NPHP3Q7Z494 AC019176.1-201ENST00000518519 225 ntBASIC1.61□□□□□ -2.15
NPHP3Q7Z494 AL442163.3-201ENST00000554110 156 ntBASIC1.61□□□□□ -2.15
NPHP3Q7Z494 AC006600.1-201ENST00000572529 153 ntBASIC1.61□□□□□ -2.15
NPHP3Q7Z494 AC011476.5-201ENST00000615594 130 ntBASIC1.61□□□□□ -2.15
NPHP3Q7Z494 Y_RNA.61-201ENST00000362835 102 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 Y_RNA.197-201ENST00000364004 102 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 Y_RNA.205-201ENST00000364128 113 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 RNU6-454P-201ENST00000364292 107 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 RNU6-1264P-201ENST00000383891 107 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 Y_RNA.393-201ENST00000383936 102 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 Y_RNA.394-201ENST00000383942 103 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 MIR520A-201ENST00000384862 85 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 MIR1267-201ENST00000408723 78 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 EBAG9P1-201ENST00000418955 543 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 CST2P1-201ENST00000425770 87 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 RAB28P5-201ENST00000427490 651 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 TOMM22P2-201ENST00000430735 237 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.6□□□□□ -2.15
NPHP3Q7Z494 snoU13.9-201ENST00000458927 103 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 AC074133.1-201ENST00000515696 183 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 RNU6-1146P-201ENST00000516282 102 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 RNU4-77P-201ENST00000516692 156 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 CYCSP23-201ENST00000519781 313 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.6□□□□□ -2.15
NPHP3Q7Z494 MIR4272-201ENST00000635924 64 ntBASIC1.6□□□□□ -2.15
NPHP3Q7Z494 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.59□□□□□ -2.15
NPHP3Q7Z494 AC010615.1-201ENST00000594254 1764 ntBASIC1.59□□□□□ -2.15
NPHP3Q7Z494 MTND4P29-201ENST00000503122 1372 ntBASIC1.59□□□□□ -2.16
NPHP3Q7Z494 Y_RNA.252-201ENST00000364556 101 ntBASIC1.59□□□□□ -2.16
NPHP3Q7Z494 MIR628-201ENST00000385229 95 ntBASIC1.59□□□□□ -2.16
NPHP3Q7Z494 RNU6-308P-201ENST00000390957 107 ntBASIC1.59□□□□□ -2.16
NPHP3Q7Z494 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.59□□□□□ -2.16
NPHP3Q7Z494 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.59□□□□□ -2.16
NPHP3Q7Z494 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.59□□□□□ -2.16
NPHP3Q7Z494 AC018865.2-201ENST00000423631 129 ntBASIC1.59□□□□□ -2.16
NPHP3Q7Z494 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.59□□□□□ -2.16
NPHP3Q7Z494 HSPE1P9-201ENST00000440046 311 ntBASIC1.59□□□□□ -2.16
NPHP3Q7Z494 AC010469.2-201ENST00000496412 480 ntBASIC1.59□□□□□ -2.16
NPHP3Q7Z494 RNA5SP437-201ENST00000517249 129 ntBASIC1.59□□□□□ -2.16
NPHP3Q7Z494 AC055872.1-201ENST00000570978 278 ntBASIC1.59□□□□□ -2.16
NPHP3Q7Z494 uc_338.22-201ENST00000622722 187 ntBASIC1.59□□□□□ -2.16
NPHP3Q7Z494 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
NPHP3Q7Z494 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
NPHP3Q7Z494 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
NPHP3Q7Z494 RNU6-1019P-201ENST00000364424 107 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 RNY3P4-201ENST00000384428 101 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 AL355796.1-201ENST00000406706 323 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 RNA5SP475-201ENST00000410568 110 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 AC005002.2-201ENST00000438228 269 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 RPL26P26-201ENST00000480251 434 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 AL163195.1-201ENST00000496941 348 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 RNA5SP436-201ENST00000516020 115 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 RNU6-976P-201ENST00000516086 111 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 AC023157.2-201ENST00000540596 141 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 VN1R91P-201ENST00000594377 169 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 SNORD58B-201ENST00000607313 66 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 AC006157.1-201ENST00000611750 366 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 AC007485.1-201ENST00000616755 206 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 MIR3674-201ENST00000636576 68 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 U6.108-201ENST00000637764 58 ntBASIC1.58□□□□□ -2.16
NPHP3Q7Z494 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.58□□□□□ -2.16
NPHP3Q7Z494 Y_RNA.31-201ENST00000362574 102 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 RNU6-1266P-201ENST00000362794 105 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 RNU6-1186P-201ENST00000410429 97 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 AL137792.2-201ENST00000443484 235 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 AC073910.1-201ENST00000445047 438 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 HSPE1P24-201ENST00000450782 238 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 RPS29P23-201ENST00000458635 123 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 RPS23P4-201ENST00000487908 423 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 RNU6-1170P-201ENST00000515974 106 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 RNU6-1012P-201ENST00000516606 109 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 MIR4659A-201ENST00000580269 81 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 MIR5188-201ENST00000583467 113 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 U6.92-201ENST00000636464 89 ntBASIC1.57□□□□□ -2.16
NPHP3Q7Z494 SNORD42.2-201ENST00000365570 69 ntBASIC1.56□□□□□ -2.16
NPHP3Q7Z494 SNORA20B-201ENST00000384220 132 ntBASIC1.56□□□□□ -2.16
NPHP3Q7Z494 Y_RNA.535-201ENST00000384612 99 ntBASIC1.56□□□□□ -2.16
NPHP3Q7Z494 RNA5SP323-201ENST00000391094 133 ntBASIC1.56□□□□□ -2.16
NPHP3Q7Z494 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.56□□□□□ -2.16
NPHP3Q7Z494 AL606517.2-201ENST00000442855 241 ntBASIC1.56□□□□□ -2.16
NPHP3Q7Z494 RNU6-970P-201ENST00000516312 107 ntBASIC1.56□□□□□ -2.16
NPHP3Q7Z494 RNU6-911P-201ENST00000516523 104 ntBASIC1.56□□□□□ -2.16
NPHP3Q7Z494 MIR5000-201ENST00000577717 103 ntBASIC1.56□□□□□ -2.16
NPHP3Q7Z494 AC004467.1-201ENST00000615678 330 ntBASIC1.56□□□□□ -2.16
NPHP3Q7Z494 AC090971.5-201ENST00000621102 293 ntBASIC1.56□□□□□ -2.16
NPHP3Q7Z494 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.56□□□□□ -2.16
NPHP3Q7Z494 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
NPHP3Q7Z494 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
NPHP3Q7Z494 AC100821.1-201ENST00000523153 2479 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 MIR410-201ENST00000362222 80 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 Y_RNA.27-201ENST00000362540 103 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 Y_RNA.39-201ENST00000362620 98 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 SNORA63D-201ENST00000364359 132 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 SNORA4.2-201ENST00000365313 147 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 Y_RNA.431-201ENST00000384086 102 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 RNA5SP109-201ENST00000391010 116 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms