| CRTC3 | Q6UUV7 | RNU6-1146P-201 | ENST00000516282 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| CRTC3 | Q6UUV7 | AC008115.2-201 | ENST00000539988 | 241 nt | TSL 3 BASIC | 2.91 | □□□□□ -1.94 | | |
| CRTC3 | Q6UUV7 | WWP1-201 | ENST00000265428 | 3362 nt | APPRIS P1 TSL 1 (best) BASIC | 2.91 | □□□□□ -1.94 | | |
| CRTC3 | Q6UUV7 | FPGT-TNNI3K-202 | ENST00000370895 | 7566 nt | TSL 2 BASIC | 2.91 | □□□□□ -1.94 | | |
| CRTC3 | Q6UUV7 | RTKN2-202 | ENST00000373789 | 6641 nt | APPRIS P1 TSL 1 (best) BASIC | 2.91 | □□□□□ -1.94 | | |
| CRTC3 | Q6UUV7 | OXR1-205 | ENST00000442977 | 2956 nt | TSL 2 BASIC | 2.91 | □□□□□ -1.94 | | |
| CRTC3 | Q6UUV7 | CPD-202 | ENST00000543464 | 4007 nt | TSL 2 BASIC | 2.9 | □□□□□ -1.94 | | |
| CRTC3 | Q6UUV7 | CHD9-218 | ENST00000566029 | 13110 nt | APPRIS P1 TSL 1 (best) BASIC | 2.9 | □□□□□ -1.94 | | |
| CRTC3 | Q6UUV7 | Y_RNA.71-201 | ENST00000362892 | 104 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-978P-201 | ENST00000364371 | 103 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | Y_RNA.251-201 | ENST00000364551 | 99 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-136P-201 | ENST00000384663 | 107 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | MIR592-201 | ENST00000384959 | 97 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-588P-201 | ENST00000410281 | 105 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC060773.1-201 | ENST00000421698 | 310 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC245047.4-201 | ENST00000433189 | 144 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | SNORD11-201 | ENST00000459124 | 84 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-1333P-201 | ENST00000516162 | 93 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-1299P-201 | ENST00000516316 | 100 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNA5SP153-201 | ENST00000516498 | 76 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-56P-201 | ENST00000516986 | 93 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC011604.1-201 | ENST00000545978 | 196 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | PRKAA2-201 | ENST00000371244 | 9347 nt | APPRIS P2 TSL 1 (best) BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | ERBIN-202 | ENST00000380935 | 6692 nt | TSL 5 BASIC | 2.9 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | PIK3C2G-202 | ENST00000433979 | 4840 nt | APPRIS P1 TSL 5 BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | snoU2-30.2-201 | ENST00000362805 | 70 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-461P-201 | ENST00000364195 | 107 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-1180P-201 | ENST00000364935 | 107 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-1080P-201 | ENST00000383982 | 107 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-80P-201 | ENST00000384195 | 107 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | MIR520G-201 | ENST00000385064 | 90 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | HMGN2P34-201 | ENST00000437647 | 269 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AL353689.1-201 | ENST00000438895 | 199 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | U91324.1-201 | ENST00000442864 | 447 nt | TSL 5 BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC023449.1-201 | ENST00000454464 | 154 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-1211P-201 | ENST00000459179 | 105 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-667P-201 | ENST00000517186 | 102 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AP001328.1-201 | ENST00000528550 | 176 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RPL23AP91-201 | ENST00000569211 | 455 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC097639.2-201 | ENST00000603159 | 172 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | U7.2-201 | ENST00000607576 | 63 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | uc_338.4-201 | ENST00000616635 | 176 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | FOXP2-211 | ENST00000408937 | 6443 nt | TSL 1 (best) BASIC | 2.89 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | NOX4-202 | ENST00000343727 | 3347 nt | TSL 2 BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | ZNF804A-202 | ENST00000613975 | 3986 nt | TSL 5 BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | SKIL-202 | ENST00000413427 | 2702 nt | TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | SKIL-203 | ENST00000426052 | 2757 nt | TSL 2 BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU1-96P-201 | ENST00000364163 | 162 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | Y_RNA.796-201 | ENST00000364268 | 102 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | Y_RNA.261-201 | ENST00000364631 | 102 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | Y_RNA.273-201 | ENST00000364703 | 102 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | Y_RNA.799-201 | ENST00000364992 | 102 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | SNORA9.2-201 | ENST00000365361 | 133 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | MIR562-201 | ENST00000384894 | 95 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU11-5P-201 | ENST00000391216 | 129 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | MIR887-201 | ENST00000401258 | 79 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | COTL1P1-201 | ENST00000422309 | 375 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC104332.2-201 | ENST00000429959 | 156 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AL139132.1-201 | ENST00000431587 | 344 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC018868.1-201 | ENST00000491307 | 315 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNA5SP76-201 | ENST00000516277 | 87 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | NDUFA5P6-201 | ENST00000542110 | 379 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AL353149.1-201 | ENST00000610667 | 244 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC011603.4-201 | ENST00000611325 | 277 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | MIR6733-201 | ENST00000635723 | 61 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | TMPRSS11A-201 | ENST00000334830 | 3054 nt | APPRIS P3 TSL 2 BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | TAB3-203 | ENST00000378930 | 6255 nt | APPRIS P1 TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | TDRD15-201 | ENST00000405799 | 6135 nt | APPRIS P1 TSL 2 BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | NEBL-202 | ENST00000377122 | 9216 nt | TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | KBTBD3-207 | ENST00000534815 | 3396 nt | TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNY1P11-201 | ENST00000363759 | 113 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-1082P-201 | ENST00000364574 | 107 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | MIR181B1-201 | ENST00000385240 | 110 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | SRIP3-201 | ENST00000413200 | 219 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RN7SL499P-201 | ENST00000481141 | 276 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC011406.1-201 | ENST00000512440 | 370 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC091826.1-201 | ENST00000514065 | 313 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | SCARNA13-201 | ENST00000516672 | 275 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-126P-201 | ENST00000516685 | 103 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-1096P-201 | ENST00000517089 | 102 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC090142.3-201 | ENST00000519012 | 385 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC009930.1-201 | ENST00000522330 | 191 nt | TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | EIF4BP1-201 | ENST00000554881 | 351 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC007229.1-201 | ENST00000590455 | 412 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | MAP4K3-205 | ENST00000437545 | 3924 nt | TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | CENPQ-201 | ENST00000335783 | 1733 nt | APPRIS P1 TSL 1 (best) BASIC | 2.87 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC138915.1-201 | ENST00000565427 | 1685 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | Y_RNA.81-201 | ENST00000362997 | 102 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | Y_RNA.111-201 | ENST00000363248 | 100 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-1209P-201 | ENST00000363655 | 107 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | SNORA25.7-201 | ENST00000364375 | 127 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AL031121.1-201 | ENST00000406553 | 254 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | SNORD88.1-201 | ENST00000408684 | 91 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | Z96811.1-201 | ENST00000445880 | 108 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU6-1234P-201 | ENST00000516877 | 103 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | RNU7-128P-201 | ENST00000517247 | 62 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC124657.1-201 | ENST00000527819 | 429 nt | TSL 3 BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | GNG2-205 | ENST00000554736 | 569 nt | APPRIS P1 TSL 4 BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | AC073413.2-201 | ENST00000604332 | 360 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| CRTC3 | Q6UUV7 | KIAA0825-203 | ENST00000513200 | 4942 nt | TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |