Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 Y_RNA.533-201ENST00000384596 114 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 SNORD41-201ENST00000386967 70 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 USP9YP16-201ENST00000430287 407 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 MTATP6P13-201ENST00000438531 667 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.26□□□□□ -2.37
SCN9AQ15858 USP9YP23-201ENST00000455085 407 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.26□□□□□ -2.37
SCN9AQ15858 RNU6-415P-201ENST00000516252 97 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 RNU7-43P-201ENST00000516554 64 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 AC027419.1-201ENST00000522976 328 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 AF235103.2-201ENST00000525753 346 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 AL158211.1-201ENST00000566763 763 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 AL121757.2-201ENST00000611223 313 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 DISC2.1-201ENST00000612827 205 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 MIR410-201ENST00000362222 80 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 RNY3P3-201ENST00000363816 102 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 Y_RNA.476-201ENST00000384347 108 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 MIR136-201ENST00000385207 82 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 RNU6-1068P-201ENST00000410958 103 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 ERLEC1P1-201ENST00000433806 578 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 AL162725.1-201ENST00000435405 301 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.26□□□□□ -2.37
SCN9AQ15858 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.26□□□□□ -2.37
SCN9AQ15858 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.26□□□□□ -2.37
SCN9AQ15858 SNORD5.1-201ENST00000458800 75 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 RN7SKP298-201ENST00000515950 94 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 RNU2-56P-201ENST00000516826 190 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 ZNF519P2-201ENST00000557032 169 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 MIR3684-201ENST00000579779 74 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 AL391262.2-201ENST00000622466 494 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.26□□□□□ -2.37
SCN9AQ15858 RNU6-522P-201ENST00000364497 107 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 RNU4-9P-201ENST00000364951 139 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 MIR452-201ENST00000385020 85 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 MIR520G-201ENST00000385064 90 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 SNORD105-201ENST00000386910 85 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 RNU4-55P-201ENST00000410731 137 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 MTCYBP10-201ENST00000424905 650 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 AC092447.3-201ENST00000426027 686 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.25□□□□□ -2.37
SCN9AQ15858 AC018710.1-201ENST00000506509 158 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.25□□□□□ -2.37
SCN9AQ15858 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.25□□□□□ -2.37
SCN9AQ15858 MIR4778-201ENST00000577635 80 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 MIR4762-201ENST00000585261 75 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 AC119751.7-201ENST00000600494 245 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 AC010999.1-201ENST00000611856 324 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.25□□□□□ -2.37
SCN9AQ15858 RNU6-1335P-201ENST00000365426 107 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
SCN9AQ15858 Y_RNA.458-201ENST00000384240 102 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 AL353193.1-201ENST00000421444 268 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 SEPT14P3-201ENST00000439401 183 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 AL031667.1-201ENST00000440222 725 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 AL732372.2-207ENST00000445840 183 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 SEPT14P2-201ENST00000453405 183 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 RPS3AP17-201ENST00000472594 777 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 AC010598.1-201ENST00000510378 103 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 SEPT14P4-201ENST00000513445 186 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 Y_RNA.706-201ENST00000516933 99 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 FO082796.1-201ENST00000523795 183 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 AC019193.3-201ENST00000609144 554 ntBASIC0.25□□□□□ -2.37
SCN9AQ15858 AC134026.1-201ENST00000623249 2239 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
SCN9AQ15858 SNORD50.1-201ENST00000362987 71 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 RNY1P16-201ENST00000363063 111 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 SNORA25.3-201ENST00000363205 127 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 MTND1P11-201ENST00000456661 876 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 RPL30P10-201ENST00000488148 337 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC0.24□□□□□ -2.37
SCN9AQ15858 AP003716.2-201ENST00000528260 108 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 AC006362.1-201ENST00000567392 174 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 Z94722.1-201ENST00000604328 474 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 AF250324.2-201ENST00000608299 610 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 AC007684.1-201ENST00000609671 477 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.24□□□□□ -2.37
SCN9AQ15858 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.24□□□□□ -2.37
SCN9AQ15858 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
SCN9AQ15858 SNORA36.2-201ENST00000384004 127 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 RNA5SP475-201ENST00000410568 110 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC0.23□□□□□ -2.37
SCN9AQ15858 RPL23AP50-201ENST00000434149 455 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.23□□□□□ -2.37
SCN9AQ15858 RNU6-1114P-201ENST00000516022 107 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 RNU6-1110P-201ENST00000516462 101 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 AC091144.1-201ENST00000519573 138 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 AC104260.1-201ENST00000616660 539 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 ZNF299P-201ENST00000406845 1804 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 AC005592.1-201ENST00000566527 1640 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 RNU6-259P-201ENST00000383999 107 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 RNU6-1145P-201ENST00000384246 107 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 RNU6-348P-201ENST00000384386 107 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 ELOCP21-201ENST00000412558 336 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC0.23□□□□□ -2.37
SCN9AQ15858 MRPS10P1-201ENST00000448483 130 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 SUMO1P2-201ENST00000452524 304 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 AC114811.1-201ENST00000507207 168 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 Y_RNA.682-201ENST00000516457 100 ntBASIC0.23□□□□□ -2.37
SCN9AQ15858 AC093023.1-201ENST00000547375 507 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms