Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AL162725.1-201ENST00000435405 301 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 AL135790.2-201ENST00000437701 267 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.75□□□□□ -1.97
SF3A1Q15459 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.75□□□□□ -1.97
SF3A1Q15459 AC233266.1-201ENST00000454518 96 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 Y_RNA.668-201ENST00000516233 93 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 RNA5SP148-201ENST00000516527 94 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 MIR5694-201ENST00000581190 76 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 AL137847.3-201ENST00000611521 109 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 AC242852.1-201ENST00000612151 96 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 MIR6817-201ENST00000615588 66 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 U2.14-201ENST00000615943 113 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 AC244015.1-201ENST00000622301 99 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
SF3A1Q15459 Y_RNA.44-201ENST00000362676 108 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 Y_RNA.54-201ENST00000362766 105 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 Y_RNA.310-201ENST00000365063 113 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 MIR520G-201ENST00000385064 90 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 RPL23AP6-201ENST00000446637 472 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 SNORD127-201ENST00000458892 86 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 RNU6-1132P-201ENST00000459214 107 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.74□□□□□ -1.97
SF3A1Q15459 RPL23AP63-201ENST00000498752 471 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 RNU6-1291P-201ENST00000516591 104 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 SNORA31.17-201ENST00000516953 127 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 RNU6-1096P-201ENST00000517089 102 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 AC012433.1-201ENST00000588916 398 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 AC005972.2-201ENST00000604690 348 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 AC067747.1-201ENST00000608026 250 ntBASIC2.74□□□□□ -1.97
SF3A1Q15459 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
SF3A1Q15459 RNA5SP432-201ENST00000362480 116 ntBASIC2.73□□□□□ -1.97
SF3A1Q15459 Y_RNA.193-201ENST00000363979 102 ntBASIC2.73□□□□□ -1.97
SF3A1Q15459 Y_RNA.621-201ENST00000411065 96 ntBASIC2.73□□□□□ -1.97
SF3A1Q15459 AL135786.1-201ENST00000415892 214 ntBASIC2.73□□□□□ -1.97
SF3A1Q15459 AL606517.2-201ENST00000442855 241 ntBASIC2.73□□□□□ -1.97
SF3A1Q15459 RPL39P38-201ENST00000467018 153 ntBASIC2.73□□□□□ -1.97
SF3A1Q15459 SNORA27.4-201ENST00000516650 95 ntBASIC2.73□□□□□ -1.97
SF3A1Q15459 RNA5SP402-201ENST00000517148 110 ntBASIC2.73□□□□□ -1.97
SF3A1Q15459 RNA5SP437-201ENST00000517249 129 ntBASIC2.73□□□□□ -1.97
SF3A1Q15459 AC004817.2-201ENST00000561794 651 ntBASIC2.73□□□□□ -1.97
SF3A1Q15459 AC062037.2-201ENST00000610137 73 ntBASIC2.73□□□□□ -1.97
SF3A1Q15459 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.73□□□□□ -1.97
SF3A1Q15459 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SF3A1Q15459 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
SF3A1Q15459 AL596028.1-201ENST00000326971 197 ntBASIC2.72□□□□□ -1.97
SF3A1Q15459 Y_RNA.14-201ENST00000362415 103 ntBASIC2.72□□□□□ -1.97
SF3A1Q15459 SNORA63D-201ENST00000364359 132 ntBASIC2.72□□□□□ -1.97
SF3A1Q15459 RNA5SP212-201ENST00000391223 107 ntBASIC2.72□□□□□ -1.97
SF3A1Q15459 BTF3P11-201ENST00000426582 477 ntBASIC2.72□□□□□ -1.97
SF3A1Q15459 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.72□□□□□ -1.97
SF3A1Q15459 AC026436.1-201ENST00000510537 270 ntBASIC2.72□□□□□ -1.97
SF3A1Q15459 AC008413.1-201ENST00000511864 177 ntBASIC2.72□□□□□ -1.97
SF3A1Q15459 AC136628.3-201ENST00000521868 290 ntBASIC2.72□□□□□ -1.97
SF3A1Q15459 AC022217.4-201ENST00000604389 163 ntBASIC2.72□□□□□ -1.97
SF3A1Q15459 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.72□□□□□ -1.97
SF3A1Q15459 MIR6840-201ENST00000611937 71 ntBASIC2.72□□□□□ -1.97
SF3A1Q15459 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
SF3A1Q15459 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
SF3A1Q15459 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.72□□□□□ -1.97
SF3A1Q15459 ZNF658B-202ENST00000615961 3375 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 AC016717.2-201ENST00000609089 5141 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
SF3A1Q15459 RNU6-1048P-201ENST00000364054 107 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 Y_RNA.518-201ENST00000384552 113 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 RNU6-296P-201ENST00000384608 107 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 SNORA80E-201ENST00000384744 137 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 MIR562-201ENST00000384894 95 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
SF3A1Q15459 MIR548H3-201ENST00000408771 118 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 AC244636.1-201ENST00000421152 228 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 RPS4XP11-201ENST00000446897 772 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 RNU2-56P-201ENST00000516826 190 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 MIR4299-201ENST00000577899 72 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.71□□□□□ -1.98
SF3A1Q15459 AL773524.1-201ENST00000614065 229 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 AL590808.1-201ENST00000618696 141 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 MIR1291-201ENST00000627649 87 ntBASIC2.71□□□□□ -1.98
SF3A1Q15459 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.7□□□□□ -1.98
SF3A1Q15459 SNORA72.4-201ENST00000384174 132 ntBASIC2.7□□□□□ -1.98
SF3A1Q15459 MTCO2P33-201ENST00000402100 465 ntBASIC2.7□□□□□ -1.98
SF3A1Q15459 RNU7-34P-201ENST00000459394 64 ntBASIC2.7□□□□□ -1.98
SF3A1Q15459 RPL36AP21-201ENST00000490372 323 ntBASIC2.7□□□□□ -1.98
SF3A1Q15459 AC117454.1-201ENST00000491120 168 ntBASIC2.7□□□□□ -1.98
SF3A1Q15459 AC134026.1-201ENST00000623249 2239 ntBASIC2.7□□□□□ -1.98
SF3A1Q15459 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
SF3A1Q15459 RNU6-1272P-201ENST00000362776 107 ntBASIC2.69□□□□□ -1.98
SF3A1Q15459 Y_RNA.350-201ENST00000365409 98 ntBASIC2.69□□□□□ -1.98
SF3A1Q15459 Y_RNA.352-201ENST00000365439 102 ntBASIC2.69□□□□□ -1.98
SF3A1Q15459 SNORA70B-201ENST00000384210 135 ntBASIC2.69□□□□□ -1.98
SF3A1Q15459 Y_RNA.477-201ENST00000384352 108 ntBASIC2.69□□□□□ -1.98
SF3A1Q15459 RNU6-763P-201ENST00000390865 106 ntBASIC2.69□□□□□ -1.98
SF3A1Q15459 SNORA26.5-201ENST00000391215 123 ntBASIC2.69□□□□□ -1.98
SF3A1Q15459 COX6CP10-201ENST00000416832 224 ntBASIC2.69□□□□□ -1.98
SF3A1Q15459 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.69□□□□□ -1.98
SF3A1Q15459 HSPE1P9-201ENST00000440046 311 ntBASIC2.69□□□□□ -1.98
SF3A1Q15459 RNA5SP481-201ENST00000516814 122 ntBASIC2.69□□□□□ -1.98
SF3A1Q15459 RNU6-341P-201ENST00000516973 96 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms