Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC012640.5-201ENST00000623897 319 ntBASIC1.75□□□□□ -2.13
LMO4P61968 AC021753.1-201ENST00000635724 168 ntBASIC1.75□□□□□ -2.13
LMO4P61968 U6.106-201ENST00000636360 105 ntBASIC1.75□□□□□ -2.13
LMO4P61968 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.75□□□□□ -2.13
LMO4P61968 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
LMO4P61968 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
LMO4P61968 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.74□□□□□ -2.13
LMO4P61968 U3.8-201ENST00000363675 217 ntBASIC1.74□□□□□ -2.13
LMO4P61968 Y_RNA.170-201ENST00000363746 110 ntBASIC1.74□□□□□ -2.13
LMO4P61968 Y_RNA.243-201ENST00000364481 109 ntBASIC1.74□□□□□ -2.13
LMO4P61968 MIR548B-201ENST00000385247 97 ntBASIC1.74□□□□□ -2.13
LMO4P61968 RNU6-763P-201ENST00000390865 106 ntBASIC1.74□□□□□ -2.13
LMO4P61968 RNU6-1248P-201ENST00000391096 64 ntBASIC1.74□□□□□ -2.13
LMO4P61968 AL357139.1-201ENST00000407792 426 ntBASIC1.74□□□□□ -2.13
LMO4P61968 CR769767.1-201ENST00000436337 346 ntBASIC1.74□□□□□ -2.13
LMO4P61968 AC018868.1-201ENST00000491307 315 ntBASIC1.74□□□□□ -2.13
LMO4P61968 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.74□□□□□ -2.13
LMO4P61968 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.74□□□□□ -2.13
LMO4P61968 RNU6-1278P-201ENST00000516130 107 ntBASIC1.74□□□□□ -2.13
LMO4P61968 RNU6-1098P-201ENST00000516772 96 ntBASIC1.74□□□□□ -2.13
LMO4P61968 RNA5SP137-201ENST00000516833 135 ntBASIC1.74□□□□□ -2.13
LMO4P61968 DEFB122-202ENST00000569013 197 ntBASIC1.74□□□□□ -2.13
LMO4P61968 AC078899.2-201ENST00000595282 212 ntBASIC1.74□□□□□ -2.13
LMO4P61968 U2.22-201ENST00000636441 106 ntBASIC1.74□□□□□ -2.13
LMO4P61968 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
LMO4P61968 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
LMO4P61968 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.74□□□□□ -2.13
LMO4P61968 AC068700.1-201ENST00000565862 3754 ntBASIC1.73□□□□□ -2.13
LMO4P61968 RNU6-801P-201ENST00000364087 105 ntBASIC1.73□□□□□ -2.13
LMO4P61968 RNU6-1305P-201ENST00000364353 104 ntBASIC1.73□□□□□ -2.13
LMO4P61968 Y_RNA.361-201ENST00000365515 120 ntBASIC1.73□□□□□ -2.13
LMO4P61968 RNU6-804P-201ENST00000384286 107 ntBASIC1.73□□□□□ -2.13
LMO4P61968 MIR586-201ENST00000385035 97 ntBASIC1.73□□□□□ -2.13
LMO4P61968 MIR764-201ENST00000390811 85 ntBASIC1.73□□□□□ -2.13
LMO4P61968 RNU2-2P-201ENST00000410396 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U8.19-201ENST00000459095 133 ntBASIC1.73□□□□□ -2.13
LMO4P61968 HMGN2P9-201ENST00000476875 229 ntBASIC1.73□□□□□ -2.13
LMO4P61968 MIR449C-201ENST00000516047 92 ntBASIC1.73□□□□□ -2.13
LMO4P61968 RNU6-789P-201ENST00000517105 102 ntBASIC1.73□□□□□ -2.13
LMO4P61968 MTND5P41-201ENST00000517498 206 ntBASIC1.73□□□□□ -2.13
LMO4P61968 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.73□□□□□ -2.13
LMO4P61968 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.73□□□□□ -2.13
LMO4P61968 AC022616.8-201ENST00000533569 253 ntBASIC1.73□□□□□ -2.13
LMO4P61968 MRPS18CP4-201ENST00000535821 231 ntBASIC1.73□□□□□ -2.13
LMO4P61968 NDUFA5P6-201ENST00000542110 379 ntBASIC1.73□□□□□ -2.13
LMO4P61968 AC015712.3-201ENST00000559380 164 ntBASIC1.73□□□□□ -2.13
LMO4P61968 MIR4529-201ENST00000578110 78 ntBASIC1.73□□□□□ -2.13
LMO4P61968 AC007229.1-201ENST00000590455 412 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.73□□□□□ -2.13
LMO4P61968 U2.15-201ENST00000611544 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U2.16-201ENST00000613119 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U2.12-201ENST00000613778 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U2.20-201ENST00000613956 192 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U2.9-201ENST00000615427 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U2.11-201ENST00000616345 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U2.2-201ENST00000616535 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U2.3-201ENST00000617785 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U2.19-201ENST00000618602 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 RNU2-1-201ENST00000618664 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U2.6-201ENST00000619225 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U2.5-201ENST00000619465 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 U2.10-201ENST00000620268 191 ntBASIC1.73□□□□□ -2.13
LMO4P61968 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.73□□□□□ -2.13
LMO4P61968 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.73□□□□□ -2.13
LMO4P61968 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
LMO4P61968 RNU6-944P-201ENST00000364023 107 ntBASIC1.72□□□□□ -2.13
LMO4P61968 Y_RNA.571-201ENST00000384753 98 ntBASIC1.72□□□□□ -2.13
LMO4P61968 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
LMO4P61968 SNORA26.5-201ENST00000391215 123 ntBASIC1.72□□□□□ -2.13
LMO4P61968 RNU5E-9P-201ENST00000411164 104 ntBASIC1.72□□□□□ -2.13
LMO4P61968 AL137159.1-201ENST00000452808 512 ntBASIC1.72□□□□□ -2.13
LMO4P61968 AC091021.1-201ENST00000468051 388 ntBASIC1.72□□□□□ -2.13
LMO4P61968 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.72□□□□□ -2.13
LMO4P61968 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.72□□□□□ -2.13
LMO4P61968 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.72□□□□□ -2.13
LMO4P61968 RNU5F-4P-201ENST00000516581 114 ntBASIC1.72□□□□□ -2.13
LMO4P61968 SUMO2P18-201ENST00000518873 252 ntBASIC1.72□□□□□ -2.13
LMO4P61968 AC100767.1-201ENST00000528178 123 ntBASIC1.72□□□□□ -2.13
LMO4P61968 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.72□□□□□ -2.13
LMO4P61968 AC018630.3-201ENST00000542637 96 ntBASIC1.72□□□□□ -2.13
LMO4P61968 MIR3910-1-201ENST00000580936 111 ntBASIC1.72□□□□□ -2.13
LMO4P61968 MIR4769-201ENST00000584126 77 ntBASIC1.72□□□□□ -2.13
LMO4P61968 RPL17P51-201ENST00000605218 238 ntBASIC1.72□□□□□ -2.13
LMO4P61968 AC104465.1-201ENST00000611365 139 ntBASIC1.72□□□□□ -2.13
LMO4P61968 U6.115-201ENST00000636045 103 ntBASIC1.72□□□□□ -2.13
LMO4P61968 ZNF355P-201ENST00000427301 3216 ntBASIC1.72□□□□□ -2.13
LMO4P61968 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.72□□□□□ -2.13
LMO4P61968 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
LMO4P61968 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC1.72□□□□□ -2.13
LMO4P61968 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.71□□□□□ -2.13
LMO4P61968 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.71□□□□□ -2.14
LMO4P61968 AL356292.1-201ENST00000283110 373 ntBASIC1.71□□□□□ -2.14
LMO4P61968 RNU6-1048P-201ENST00000364054 107 ntBASIC1.71□□□□□ -2.14
LMO4P61968 RNU4-17P-201ENST00000365598 141 ntBASIC1.71□□□□□ -2.14
LMO4P61968 SNORA6-201ENST00000384033 151 ntBASIC1.71□□□□□ -2.14
LMO4P61968 SNORA19-201ENST00000384737 128 ntBASIC1.71□□□□□ -2.14
LMO4P61968 SNORA40.19-201ENST00000390846 128 ntBASIC1.71□□□□□ -2.14
LMO4P61968 MIR1185-2-201ENST00000408687 86 ntBASIC1.71□□□□□ -2.14
LMO4P61968 RNU6-394P-201ENST00000410735 107 ntBASIC1.71□□□□□ -2.14
LMO4P61968 RNU6-1135P-201ENST00000411083 103 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms