Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SNORD3E-202ENST00000627253 216 ntBASIC0.86□□□□□ -2.27
CXCL12P48061 MIR6079-201ENST00000635807 62 ntBASIC0.86□□□□□ -2.27
CXCL12P48061 AC068647.2-201ENST00000637380 353 ntBASIC0.86□□□□□ -2.27
CXCL12P48061 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.85□□□□□ -2.27
CXCL12P48061 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
CXCL12P48061 RNU6-1264P-201ENST00000383891 107 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 Y_RNA.482-201ENST00000384377 111 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 MTCYBP10-201ENST00000424905 650 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 AC092423.1-201ENST00000430165 186 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.85□□□□□ -2.27
CXCL12P48061 DYNLT3P2-201ENST00000442517 295 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.85□□□□□ -2.27
CXCL12P48061 RNU7-94P-201ENST00000459576 63 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 RPL39P38-201ENST00000467018 153 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.85□□□□□ -2.27
CXCL12P48061 SCARNA16.2-201ENST00000516520 172 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 RNU7-30P-201ENST00000516835 62 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 RNU6-1213P-201ENST00000517075 94 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 AP002001.1-203ENST00000534002 267 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.85□□□□□ -2.27
CXCL12P48061 AC018448.1-201ENST00000552843 316 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 AC133485.1-201ENST00000567176 124 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 AC138907.6-201ENST00000568401 126 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 MIR4778-201ENST00000577635 80 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 AC073544.1-201ENST00000600110 1595 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 HSPE1P19-201ENST00000603327 295 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 AL590095.2-201ENST00000604136 117 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 AC104260.1-201ENST00000616660 539 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 AC007742.2-201ENST00000618226 398 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 MIR8065-201ENST00000620577 100 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 AC008133.2-201ENST00000624540 351 ntBASIC0.85□□□□□ -2.27
CXCL12P48061 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
CXCL12P48061 AL442644.1-201ENST00000454390 3105 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 Y_RNA.72-201ENST00000362894 103 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 RNU6-407P-201ENST00000365280 104 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 RNU6-318P-201ENST00000384283 103 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 RNU6-505P-201ENST00000384427 107 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 Y_RNA.498-201ENST00000384460 102 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 MTCO3P19-201ENST00000415864 321 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.84□□□□□ -2.27
CXCL12P48061 AC018865.2-201ENST00000423631 129 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 PCNPP5-201ENST00000452246 481 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 AC091021.1-201ENST00000468051 388 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.84□□□□□ -2.27
CXCL12P48061 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.84□□□□□ -2.27
CXCL12P48061 RNA5SP20-201ENST00000515976 84 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 RNU6-165P-201ENST00000517170 99 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 CYCSP23-201ENST00000519781 313 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 FAM71BP1-201ENST00000604431 523 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 MIR1244-1-201ENST00000612829 85 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 PISRT1.1-201ENST00000616930 107 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 AL513423.1-201ENST00000621695 132 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 MIR1244-3-201ENST00000635744 85 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 MIR1244-2-201ENST00000636449 85 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 MIR1244-4-202ENST00000636813 85 ntBASIC0.84□□□□□ -2.27
CXCL12P48061 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
CXCL12P48061 SNORA27.1-201ENST00000362604 124 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 RNU6-454P-201ENST00000364292 107 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 Y_RNA.267-201ENST00000364679 109 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 MIR660-201ENST00000385235 97 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 SNORA75.4-201ENST00000391278 119 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
CXCL12P48061 MTCYBP4-201ENST00000401524 249 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 RNU4-14P-201ENST00000410858 122 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.83□□□□□ -2.28
CXCL12P48061 CALM2P4-201ENST00000430810 426 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.83□□□□□ -2.28
CXCL12P48061 MTND4P17-201ENST00000470444 350 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 RNU6-922P-201ENST00000516753 99 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 AC092794.2-201ENST00000620933 563 ntBASIC0.83□□□□□ -2.28
CXCL12P48061 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.83□□□□□ -2.28
CXCL12P48061 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CXCL12P48061 Y_RNA.30-201ENST00000362572 97 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 RNU4-76P-201ENST00000364509 141 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 RNU6-99P-201ENST00000364721 107 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.82□□□□□ -2.28
CXCL12P48061 RNU6-767P-201ENST00000384132 107 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 RNU6-192P-201ENST00000391253 100 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 MIR936-201ENST00000401264 98 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 RPL23AP50-201ENST00000434149 455 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 UBE2V1P7-201ENST00000446395 340 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 FGF7P6-202ENST00000451282 293 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 RNU6-625P-201ENST00000459412 107 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.82□□□□□ -2.28
CXCL12P48061 AC116353.2-201ENST00000505332 712 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 AC074133.1-201ENST00000515696 183 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 SNORA40.9-201ENST00000515895 93 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 RNU6-120P-201ENST00000516077 103 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 RNA5SP168-201ENST00000516642 112 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 DEFB108E-201ENST00000524692 240 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 RPL21P9-201ENST00000556149 474 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 AC091178.2-201ENST00000584401 117 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 AL162424.1-201ENST00000602325 221 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.82□□□□□ -2.28
CXCL12P48061 MIR6835-201ENST00000621552 64 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 U6.115-201ENST00000636045 103 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 AC099654.5-201ENST00000636479 350 ntBASIC0.82□□□□□ -2.28
CXCL12P48061 AC005592.1-201ENST00000566527 1640 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms