Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.27
SCN1AP35498 RNU6-1123P-201ENST00000362347 106 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 RNU1-124P-201ENST00000363861 145 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 SNORD115-30-201ENST00000364117 82 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 Y_RNA.364-201ENST00000365532 101 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 RNY3P4-201ENST00000384428 101 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 MIR548K-201ENST00000408406 116 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 AC008134.1-201ENST00000420943 193 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 MRPL35P3-201ENST00000421557 364 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 RAB28P5-201ENST00000427490 651 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.84□□□□□ -2.28
SCN1AP35498 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.84□□□□□ -2.28
SCN1AP35498 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.84□□□□□ -2.28
SCN1AP35498 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.84□□□□□ -2.28
SCN1AP35498 RNU6-470P-201ENST00000515954 104 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 MTND4LP26-201ENST00000518144 282 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.84□□□□□ -2.28
SCN1AP35498 CYP3A52P-201ENST00000563326 91 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 AC099654.5-201ENST00000636479 350 ntBASIC0.84□□□□□ -2.28
SCN1AP35498 Y_RNA.27-201ENST00000362540 103 ntBASIC0.83□□□□□ -2.28
SCN1AP35498 Y_RNA.205-201ENST00000364128 113 ntBASIC0.83□□□□□ -2.28
SCN1AP35498 Y_RNA.265-201ENST00000364677 108 ntBASIC0.83□□□□□ -2.28
SCN1AP35498 RNU1-133P-201ENST00000364867 167 ntBASIC0.83□□□□□ -2.28
SCN1AP35498 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
SCN1AP35498 RNU6-1304P-201ENST00000411374 106 ntBASIC0.83□□□□□ -2.28
SCN1AP35498 FCF1P4-201ENST00000448326 183 ntBASIC0.83□□□□□ -2.28
SCN1AP35498 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.83□□□□□ -2.28
SCN1AP35498 RNU6-351P-201ENST00000516097 100 ntBASIC0.83□□□□□ -2.28
SCN1AP35498 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN1AP35498 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN1AP35498 AL390123.1-201ENST00000603216 237 ntBASIC0.83□□□□□ -2.28
SCN1AP35498 AC005828.6-201ENST00000606610 232 ntBASIC0.83□□□□□ -2.28
SCN1AP35498 AC087588.2-201ENST00000617667 426 ntBASIC0.83□□□□□ -2.28
SCN1AP35498 MIRLET7C-201ENST00000362160 84 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 MIR302D-201ENST00000362275 68 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 RNU6-874P-201ENST00000362390 105 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 Y_RNA.48-201ENST00000362710 103 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 SNORD68-201ENST00000363214 84 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 Y_RNA.361-201ENST00000365515 120 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 MTND4P28-201ENST00000426217 387 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.82□□□□□ -2.28
SCN1AP35498 U8.22-201ENST00000459141 133 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 SNORA31.4-201ENST00000516049 129 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 RNU6-277P-201ENST00000516272 106 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 RNU7-172P-201ENST00000517125 64 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 AC084782.3-201ENST00000612282 578 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 MIR6835-201ENST00000621552 64 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 AL669831.3-213ENST00000636676 183 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 SNORA1B-201ENST00000362535 133 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 RNA5SP361-201ENST00000362686 118 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 RNU6-1301P-201ENST00000362724 104 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 SNORD81.2-201ENST00000365153 76 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 RNU6-1031P-201ENST00000384773 107 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 RNU6-910P-201ENST00000390844 107 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 RNU6-440P-201ENST00000390882 105 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 AC245047.7-201ENST00000440265 293 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 UQCRBP2-201ENST00000447827 297 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.82□□□□□ -2.28
SCN1AP35498 AC009229.3-201ENST00000608056 282 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 AL513423.1-201ENST00000621695 132 ntBASIC0.82□□□□□ -2.28
SCN1AP35498 RNU6-1266P-201ENST00000362794 105 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 Y_RNA.88-201ENST00000363029 99 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 Y_RNA.267-201ENST00000364679 109 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 MIR19B1-201ENST00000384829 87 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 AC114482.1-201ENST00000418010 247 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 SNX2P2-201ENST00000424553 323 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 AC005002.2-201ENST00000438228 269 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.81□□□□□ -2.28
SCN1AP35498 AC098614.3-201ENST00000438957 440 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 AC027119.1-201ENST00000440877 241 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.81□□□□□ -2.28
SCN1AP35498 RNU6-107P-201ENST00000516643 102 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 RNU6-1213P-201ENST00000517075 94 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 RNA5SP404-201ENST00000517118 132 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 AP002004.2-201ENST00000531656 154 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 AL513534.2-201ENST00000603836 250 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 AL357312.1-201ENST00000603879 298 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 AC106754.2-201ENST00000623006 233 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 CASC19-280ENST00000642102 1351 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 Y_RNA.72-201ENST00000362894 103 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 SNORA25-201ENST00000384384 134 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 MIR598-201ENST00000384868 97 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 SNORA12.1-201ENST00000390873 148 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 RNA5SP109-201ENST00000391010 116 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 RNA5SP482-201ENST00000391269 118 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 MRPL42P3-201ENST00000401492 326 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 RNU6-370P-201ENST00000411008 104 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 Z98949.2-201ENST00000440996 144 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 AP000870.1-201ENST00000472927 406 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.81□□□□□ -2.28
SCN1AP35498 RNA5SP20-201ENST00000515976 84 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 RNU6-559P-201ENST00000516151 98 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN1AP35498 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.81□□□□□ -2.28
SCN1AP35498 MIR5690-201ENST00000583739 73 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 AC060780.3-201ENST00000589464 80 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms