Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 SEPT14P8-201ENST00000508026 178 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 MRPS35P2-201ENST00000508242 191 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 SNORA70.12-201ENST00000516084 153 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 SCARNA15.1-201ENST00000516384 125 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.91□□□□□ -2.1
SHMT1P34896 AC027419.1-201ENST00000522976 328 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 AC024995.1-201ENST00000523014 93 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 AC136932.1-201ENST00000574771 208 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 MIR5094-201ENST00000578766 85 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 AL645939.4-201ENST00000604495 135 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 SNORD113-5-201ENST00000607261 78 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 AL359075.3-201ENST00000613288 217 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 U6.73-201ENST00000619194 103 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
SHMT1P34896 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
SHMT1P34896 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.1
SHMT1P34896 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
SHMT1P34896 Y_RNA.162-201ENST00000363683 102 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 RNU6-1019P-201ENST00000364424 107 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 Y_RNA.331-201ENST00000365267 102 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 SNORD115-46-201ENST00000390982 71 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 AL158823.1-201ENST00000418441 478 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 ELOCP20-201ENST00000422460 345 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.9□□□□□ -2.11
SHMT1P34896 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.9□□□□□ -2.11
SHMT1P34896 RNA5SP20-201ENST00000515976 84 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 RNY3P15-201ENST00000516297 97 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 RNU1-142P-201ENST00000516682 145 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 SUB1P4-201ENST00000566062 339 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 MIR4300-201ENST00000581016 96 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 MIR4438-201ENST00000585271 93 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 AC008737.2-201ENST00000599446 118 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 snoU13.31-201ENST00000607291 104 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 AC099654.10-201ENST00000640395 161 ntBASIC1.9□□□□□ -2.11
SHMT1P34896 RNA5SP276-201ENST00000362580 94 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 RNU6-324P-201ENST00000363957 106 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 RNU6-407P-201ENST00000365280 104 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 Y_RNA.361-201ENST00000365515 120 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 MIR676-201ENST00000390702 67 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 RNA5SP323-201ENST00000391094 133 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 RNA5SP212-201ENST00000391223 107 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 RNA5SP467-201ENST00000391274 118 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 AL031003.1-201ENST00000404229 172 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.89□□□□□ -2.11
SHMT1P34896 AC069257.2-201ENST00000441819 155 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.89□□□□□ -2.11
SHMT1P34896 MRPS10P1-201ENST00000448483 130 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 RPL23AP3-201ENST00000453844 468 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 MTND5P22-201ENST00000458380 195 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 AL360085.1-201ENST00000604713 532 ntBASIC1.89□□□□□ -2.11
SHMT1P34896 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.89□□□□□ -2.11
SHMT1P34896 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
SHMT1P34896 Y_RNA.19-201ENST00000362462 99 ntBASIC1.88□□□□□ -2.11
SHMT1P34896 RNU11-5P-201ENST00000391216 129 ntBASIC1.88□□□□□ -2.11
SHMT1P34896 RPL21P1-201ENST00000399532 476 ntBASIC1.88□□□□□ -2.11
SHMT1P34896 RN7SKP101-201ENST00000411376 320 ntBASIC1.88□□□□□ -2.11
SHMT1P34896 RN7SL274P-201ENST00000492268 272 ntBASIC1.88□□□□□ -2.11
SHMT1P34896 HMGB3P17-201ENST00000504195 649 ntBASIC1.88□□□□□ -2.11
SHMT1P34896 RNU6-436P-201ENST00000516171 114 ntBASIC1.88□□□□□ -2.11
SHMT1P34896 RNU6-327P-201ENST00000516270 127 ntBASIC1.88□□□□□ -2.11
SHMT1P34896 RNU7-99P-201ENST00000516271 62 ntBASIC1.88□□□□□ -2.11
SHMT1P34896 AC023157.2-201ENST00000540596 141 ntBASIC1.88□□□□□ -2.11
SHMT1P34896 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.88□□□□□ -2.11
SHMT1P34896 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.88□□□□□ -2.11
SHMT1P34896 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SHMT1P34896 SNORD113-8-201ENST00000363497 74 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 SNORA8-201ENST00000384574 139 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 RNU4-30P-201ENST00000410245 143 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 RNU6-1186P-201ENST00000410429 97 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 AL731563.1-201ENST00000442202 214 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 LINC01399-202ENST00000458450 244 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 RNU7-95P-201ENST00000459222 64 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 AC025465.3-201ENST00000510570 311 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.87□□□□□ -2.11
SHMT1P34896 AC084364.2-201ENST00000546924 395 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 DNAJC19P9-201ENST00000555084 351 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 PRR13P7-201ENST00000605538 430 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 AL773524.1-201ENST00000614065 229 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 AC010615.1-201ENST00000594254 1764 ntBASIC1.87□□□□□ -2.11
SHMT1P34896 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.86□□□□□ -2.11
SHMT1P34896 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
SHMT1P34896 RNU1-42P-201ENST00000364033 160 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 RNU6-60P-201ENST00000364792 103 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 Y_RNA.459-201ENST00000384251 102 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
SHMT1P34896 RNU6-1109P-201ENST00000391187 107 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 MIR1323-201ENST00000408090 73 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 EBAG9P1-201ENST00000418955 543 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 AC024067.1-201ENST00000426199 223 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.86□□□□□ -2.11
SHMT1P34896 RNA5SP57-201ENST00000459463 123 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 RPS26P55-201ENST00000471178 356 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 AC097462.1-201ENST00000514125 324 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 RNU6-1045P-201ENST00000516321 107 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 RNU6-966P-201ENST00000516479 104 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 RNU7-172P-201ENST00000517125 64 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms