Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXD3P31249 HSPE1P13-201ENST00000451143 297 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 SUMO1P2-201ENST00000452524 304 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXD3P31249 AC074198.2-201ENST00000508153 258 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXD3P31249 RNU6-861P-201ENST00000516745 106 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 Y_RNA.700-201ENST00000516806 100 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 RNU6-826P-201ENST00000516827 104 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXD3P31249 MIR4438-201ENST00000585271 93 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 SNORD14A-201ENST00000606526 91 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.98□□□□□ -2.09
HOXD3P31249 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HOXD3P31249 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
HOXD3P31249 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.97□□□□□ -2.09
HOXD3P31249 RNA5SP289-201ENST00000362332 137 ntBASIC1.97□□□□□ -2.09
HOXD3P31249 Y_RNA.99-201ENST00000363138 105 ntBASIC1.97□□□□□ -2.09
HOXD3P31249 RNU1-22P-201ENST00000363334 158 ntBASIC1.97□□□□□ -2.09
HOXD3P31249 RNA5SP493-201ENST00000364115 91 ntBASIC1.97□□□□□ -2.09
HOXD3P31249 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.97□□□□□ -2.09
HOXD3P31249 RNU6-1186P-201ENST00000410429 97 ntBASIC1.97□□□□□ -2.09
HOXD3P31249 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.97□□□□□ -2.09
HOXD3P31249 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
HOXD3P31249 AC021269.2-201ENST00000532318 330 ntBASIC1.97□□□□□ -2.09
HOXD3P31249 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.97□□□□□ -2.09
HOXD3P31249 AC015720.1-201ENST00000565251 277 ntBASIC1.97□□□□□ -2.09
HOXD3P31249 Z83818.1-201ENST00000603584 150 ntBASIC1.97□□□□□ -2.09
HOXD3P31249 FTX_2.1-201ENST00000618816 94 ntBASIC1.97□□□□□ -2.09
HOXD3P31249 MIR338-201ENST00000636369 67 ntBASIC1.97□□□□□ -2.09
HOXD3P31249 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
HOXD3P31249 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
HOXD3P31249 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
HOXD3P31249 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
HOXD3P31249 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
HOXD3P31249 AC009487.4-201ENST00000624969 3585 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.96□□□□□ -2.1
HOXD3P31249 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
HOXD3P31249 RNU6-1020P-201ENST00000363684 107 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 RNU6-682P-201ENST00000363843 106 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 RNU6-899P-201ENST00000363947 107 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 SNORA3A-201ENST00000364113 130 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 SNORA3.2-201ENST00000408221 125 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 RNU6-383P-201ENST00000410864 94 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.96□□□□□ -2.1
HOXD3P31249 RN7SL297P-201ENST00000483161 293 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.96□□□□□ -2.1
HOXD3P31249 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.96□□□□□ -2.1
HOXD3P31249 RNU1-41P-201ENST00000516161 162 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 RNA5SP320-201ENST00000516263 124 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 RNU1-48P-201ENST00000516400 162 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 RNU7-115P-201ENST00000516433 55 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 RNU7-172P-201ENST00000517125 64 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 SUMO2P18-201ENST00000518873 252 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 AC005972.2-201ENST00000604690 348 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 AC098479.1-201ENST00000609225 154 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 U6.73-201ENST00000619194 103 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 MIR7843-201ENST00000622274 79 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 WARS-244ENST00000627608 123 ntTSL 5 BASIC1.96□□□□□ -2.1
HOXD3P31249 CENPCP1-201ENST00000533085 2578 ntBASIC1.96□□□□□ -2.1
HOXD3P31249 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
HOXD3P31249 Y_RNA.24-201ENST00000362508 103 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 snoU2-30.2-201ENST00000362805 70 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 snoU2_19.4-201ENST00000364329 80 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 RNU6-160P-201ENST00000384591 107 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 PCNPP3-201ENST00000393579 471 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 AL117342.1-201ENST00000404861 406 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC1.95□□□□□ -2.1
HOXD3P31249 EDDM3CP-201ENST00000415977 425 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 EBAG9P1-201ENST00000418955 543 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 BX510359.4-201ENST00000423750 193 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.95□□□□□ -2.1
HOXD3P31249 RNU7-120P-201ENST00000459334 63 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 snoU13.26-201ENST00000459452 105 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.95□□□□□ -2.1
HOXD3P31249 AC097462.1-201ENST00000514125 324 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 AP005660.1-201ENST00000522972 293 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 AC100767.1-201ENST00000528178 123 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 AL137100.2-201ENST00000555786 315 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 MIR3169-201ENST00000578032 83 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 POLR3GP1-201ENST00000594073 261 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.95□□□□□ -2.1
HOXD3P31249 MIR6895-201ENST00000613497 78 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.95□□□□□ -2.1
HOXD3P31249 AC006435.5-201ENST00000624486 112 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 MIR203B-201ENST00000636080 86 ntBASIC1.95□□□□□ -2.1
HOXD3P31249 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.95□□□□□ -2.1
HOXD3P31249 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
HOXD3P31249 RNU6-862P-201ENST00000362804 105 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 RNU6-1205P-201ENST00000363625 106 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 Y_RNA.270-201ENST00000364693 104 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 SNORA67.4-201ENST00000384688 142 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 MIR27B-201ENST00000385129 97 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 MIR1278-201ENST00000408753 81 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 RNU2-2P-201ENST00000410396 191 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 SNORA36B-201ENST00000410438 131 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 AL135786.1-201ENST00000415892 214 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 AL162725.1-201ENST00000435405 301 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 AC099677.2-201ENST00000436385 175 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms