Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL8A1P27658 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.28□□□□□ -1.88
COL8A1P27658 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL8A1P27658 AC018630.2-201ENST00000534866 2403 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 MIR126-201ENST00000362291 85 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 RNU6-743P-201ENST00000364151 106 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
COL8A1P27658 RNA5SP306-201ENST00000411087 107 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 DBIP2-201ENST00000419076 262 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 FTH1P12-201ENST00000432137 551 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 RN7SL271P-201ENST00000487601 295 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 RPS26P15-201ENST00000488067 348 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 AC006445.1-201ENST00000491925 405 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 RPL23AP63-201ENST00000498752 471 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 RNU2-27P-201ENST00000516185 142 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.28□□□□□ -1.88
COL8A1P27658 AC090115.4-201ENST00000609970 188 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 MIR7112-201ENST00000616126 65 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 MIR7702-201ENST00000621931 59 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 AC095038.3-201ENST00000634439 195 ntBASIC3.28□□□□□ -1.88
COL8A1P27658 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
COL8A1P27658 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.28□□□□□ -1.88
COL8A1P27658 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.27□□□□□ -1.89
COL8A1P27658 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL8A1P27658 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL8A1P27658 SNORD9-201ENST00000362566 104 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 Y_RNA.299-201ENST00000364973 94 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 Y_RNA.545-201ENST00000384652 105 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 U8.15-201ENST00000390947 134 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 SNORA7.5-201ENST00000410672 110 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 RNA5SP144-201ENST00000410846 116 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 AL445646.1-201ENST00000431784 216 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 AC114801.3-201ENST00000510231 177 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 SNORA18.7-201ENST00000516910 131 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 AL358944.1-201ENST00000528537 144 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 AC004812.1-201ENST00000540773 146 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
COL8A1P27658 AC091544.4-201ENST00000555268 342 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 AC078899.2-201ENST00000595282 212 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 AL513534.2-201ENST00000603836 250 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 AC090517.3-201ENST00000625170 141 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.27□□□□□ -1.89
COL8A1P27658 USP8P1-201ENST00000494673 3183 ntBASIC3.27□□□□□ -1.89
COL8A1P27658 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL8A1P27658 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL8A1P27658 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.26□□□□□ -1.89
COL8A1P27658 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL8A1P27658 RNA5SP374-201ENST00000362939 125 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 RNU4-16P-201ENST00000364737 141 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 RNU6-438P-201ENST00000365561 103 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 Y_RNA.547-201ENST00000384654 119 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
COL8A1P27658 HMGN2P8-201ENST00000391458 268 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 AL022718.1-201ENST00000412004 84 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.26□□□□□ -1.89
COL8A1P27658 AP002884.2-201ENST00000471647 395 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.26□□□□□ -1.89
COL8A1P27658 AC025554.1-201ENST00000505641 188 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 SNORA70.14-201ENST00000516205 110 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 Vault.1-201ENST00000516474 102 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 SNORA70.18-201ENST00000516696 98 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 HSPE1P19-201ENST00000603327 295 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 AC096720.1-201ENST00000604441 183 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 AL110115.1-201ENST00000614396 364 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 AL162274.2-201ENST00000614406 332 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.26□□□□□ -1.89
COL8A1P27658 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.26□□□□□ -1.89
COL8A1P27658 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
COL8A1P27658 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.26□□□□□ -1.89
COL8A1P27658 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL8A1P27658 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
COL8A1P27658 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.26□□□□□ -1.89
COL8A1P27658 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
COL8A1P27658 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
COL8A1P27658 SNORA80A-201ENST00000363922 136 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 RNU6-442P-201ENST00000383968 104 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 RNU6-616P-201ENST00000384353 107 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 MIR522-201ENST00000385071 87 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
COL8A1P27658 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.25□□□□□ -1.89
COL8A1P27658 AC097463.2-201ENST00000421074 142 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 RPS15AP28-201ENST00000435088 386 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 AC025750.2-201ENST00000442609 450 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 SNORD105B-201ENST00000458770 79 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 RNA5SP310-201ENST00000459084 116 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 RNU7-23P-201ENST00000459465 62 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 RNU6-1291P-201ENST00000516591 104 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 AP003484.1-201ENST00000530974 250 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.25□□□□□ -1.89
COL8A1P27658 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL8A1P27658 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL8A1P27658 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
COL8A1P27658 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
COL8A1P27658 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL8A1P27658 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.24□□□□□ -1.89
COL8A1P27658 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL8A1P27658 MIR1253-201ENST00000408273 105 ntBASIC3.24□□□□□ -1.89
COL8A1P27658 RN7SKP200-201ENST00000410564 320 ntBASIC3.24□□□□□ -1.89
COL8A1P27658 AL512326.2-201ENST00000426359 151 ntBASIC3.24□□□□□ -1.89
COL8A1P27658 AC087499.4-201ENST00000448505 178 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms