Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RPL39P28-201ENST00000465655 155 ntBASIC0.75□□□□□ -2.29
COL5A3P25940 AC091951.2-201ENST00000500762 203 ntBASIC0.75□□□□□ -2.29
COL5A3P25940 AC093023.1-201ENST00000547375 507 ntBASIC0.75□□□□□ -2.29
COL5A3P25940 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.75□□□□□ -2.29
COL5A3P25940 AC090617.3-201ENST00000573670 475 ntBASIC0.75□□□□□ -2.29
COL5A3P25940 AL132765.2-201ENST00000610812 351 ntBASIC0.75□□□□□ -2.29
COL5A3P25940 AC084781.2-201ENST00000615568 161 ntBASIC0.75□□□□□ -2.29
COL5A3P25940 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
COL5A3P25940 RNU1-76P-201ENST00000362903 159 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 Y_RNA.474-201ENST00000384341 102 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 SNORD116-29-201ENST00000384516 83 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 Y_RNA.529-201ENST00000384586 119 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 MIR1253-201ENST00000408273 105 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 RNU6-57P-201ENST00000411348 103 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 MTND4P18-201ENST00000447010 465 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 AC114982.1-201ENST00000469402 321 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 HMGN2P9-201ENST00000476875 229 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 RNU6-507P-201ENST00000516045 100 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 RNU6-559P-201ENST00000516151 98 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 RNU1-142P-201ENST00000516682 145 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 RNU6-307P-201ENST00000516743 106 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 SUMO2P18-201ENST00000518873 252 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 SNORD11B-201ENST00000607707 90 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.74□□□□□ -2.29
COL5A3P25940 snoZ196.1-201ENST00000625269 89 ntBASIC0.74□□□□□ -2.29
COL5A3P25940 Y_RNA.67-201ENST00000362870 100 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 Y_RNA.106-201ENST00000363189 100 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 RNU6-23P-201ENST00000363283 107 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 RNU6-112P-201ENST00000363599 104 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 RNU5F-3P-201ENST00000363767 117 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 Y_RNA.187-201ENST00000363918 113 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 Y_RNA.287-201ENST00000364853 94 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 Y_RNA.358-201ENST00000365491 99 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 Y_RNA.364-201ENST00000365532 101 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 RNU6-338P-201ENST00000383888 105 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 MIR190B-201ENST00000401119 79 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 AL353997.1-201ENST00000432936 108 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.73□□□□□ -2.29
COL5A3P25940 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.73□□□□□ -2.29
COL5A3P25940 snoU13.9-201ENST00000458927 103 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 MTND4P17-201ENST00000470444 350 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.73□□□□□ -2.29
COL5A3P25940 RNU6-277P-201ENST00000516272 106 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 RNU6-1016P-201ENST00000516689 94 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 SNORA20.3-201ENST00000516880 132 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 RNU6-699P-201ENST00000517081 110 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 AC144568.1-201ENST00000520139 137 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 AK6P2-201ENST00000549020 471 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 AC026470.2-201ENST00000561492 181 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.73□□□□□ -2.29
COL5A3P25940 AL355375.2-201ENST00000574825 175 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 LARP7P1-201ENST00000605576 316 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 MIR1244-1-201ENST00000612829 85 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 AL078596.1-201ENST00000624856 447 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 MIR1244-3-201ENST00000635744 85 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 MIR1244-2-201ENST00000636449 85 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 MIR1244-4-202ENST00000636813 85 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 AL391516.1-201ENST00000554380 2449 ntBASIC0.73□□□□□ -2.29
COL5A3P25940 MIR424-201ENST00000362227 98 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RNU6-1301P-201ENST00000362724 104 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 snoU2-30.2-201ENST00000362805 70 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 Y_RNA.80-201ENST00000362996 102 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RNU4-73P-201ENST00000363164 141 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 Y_RNA.184-201ENST00000363884 108 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RNU1-96P-201ENST00000364163 162 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RNU6-1187P-201ENST00000364771 110 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 Y_RNA.314-201ENST00000365114 102 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RNU6-1283P-201ENST00000365314 105 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 SNORA2A-201ENST00000383885 135 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 Y_RNA.485-201ENST00000384395 102 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 MIR329-1-201ENST00000385028 80 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 MTCYBP4-201ENST00000401524 249 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RNU6-1186P-201ENST00000410429 97 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 Y_RNA.646-201ENST00000410980 101 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.72□□□□□ -2.29
COL5A3P25940 AP000870.1-201ENST00000472927 406 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.72□□□□□ -2.29
COL5A3P25940 AC025465.3-201ENST00000510570 311 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RNU6-911P-201ENST00000516523 104 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RNU1-117P-201ENST00000517041 158 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 AC025647.1-201ENST00000517879 253 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC0.72□□□□□ -2.29
COL5A3P25940 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.72□□□□□ -2.29
COL5A3P25940 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.72□□□□□ -2.29
COL5A3P25940 MIR5695-201ENST00000579717 85 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 UBE2V2P2-201ENST00000587677 504 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 AC100812.1-201ENST00000607622 580 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 AL121890.5-201ENST00000620848 304 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 AL359697.1-201ENST00000624879 587 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.72□□□□□ -2.29
COL5A3P25940 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
COL5A3P25940 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
COL5A3P25940 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
COL5A3P25940 SNORA48.1-201ENST00000390879 135 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RNU6-370P-201ENST00000411008 104 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 MTCO3P10-201ENST00000455912 772 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RPL30P15-201ENST00000457129 321 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms