Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.31□□□□□ -2.2
VIMP08670 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
VIMP08670 ZNF72P-201ENST00000425869 1908 ntBASIC1.3□□□□□ -2.2
VIMP08670 RNU4-13P-201ENST00000364019 141 ntBASIC1.3□□□□□ -2.2
VIMP08670 RNU6-20P-201ENST00000384106 107 ntBASIC1.3□□□□□ -2.2
VIMP08670 MIR520G-201ENST00000385064 90 ntBASIC1.3□□□□□ -2.2
VIMP08670 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.3□□□□□ -2.2
VIMP08670 CHEK2P4-201ENST00000450340 246 ntBASIC1.3□□□□□ -2.2
VIMP08670 FGF7P4-201ENST00000509595 295 ntBASIC1.3□□□□□ -2.2
VIMP08670 RNU6-911P-201ENST00000516523 104 ntBASIC1.3□□□□□ -2.2
VIMP08670 RNU6-1096P-201ENST00000517089 102 ntBASIC1.3□□□□□ -2.2
VIMP08670 MIR4659A-201ENST00000580269 81 ntBASIC1.3□□□□□ -2.2
VIMP08670 MIR4801-201ENST00000582704 82 ntBASIC1.3□□□□□ -2.2
VIMP08670 AC005176.2-201ENST00000596933 147 ntBASIC1.3□□□□□ -2.2
VIMP08670 AL050343.2-201ENST00000607338 280 ntBASIC1.3□□□□□ -2.2
VIMP08670 AC240442.1-201ENST00000616055 283 ntBASIC1.3□□□□□ -2.2
VIMP08670 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.3□□□□□ -2.2
VIMP08670 MIR8065-201ENST00000620577 100 ntBASIC1.3□□□□□ -2.2
VIMP08670 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.3□□□□□ -2.2
VIMP08670 RNA5SP327-201ENST00000362494 101 ntBASIC1.29□□□□□ -2.2
VIMP08670 RNU6-626P-201ENST00000363354 107 ntBASIC1.29□□□□□ -2.2
VIMP08670 Y_RNA.463-201ENST00000384271 102 ntBASIC1.29□□□□□ -2.2
VIMP08670 Y_RNA.529-201ENST00000384586 119 ntBASIC1.29□□□□□ -2.2
VIMP08670 AL031003.1-201ENST00000404229 172 ntBASIC1.29□□□□□ -2.2
VIMP08670 RNU2-54P-201ENST00000410299 190 ntBASIC1.29□□□□□ -2.2
VIMP08670 MTCO2P27-201ENST00000420740 428 ntBASIC1.29□□□□□ -2.2
VIMP08670 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.29□□□□□ -2.2
VIMP08670 OOSP1P1-201ENST00000423265 274 ntBASIC1.29□□□□□ -2.2
VIMP08670 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.29□□□□□ -2.2
VIMP08670 DYNLT3P2-201ENST00000442517 295 ntBASIC1.29□□□□□ -2.2
VIMP08670 RNU6-507P-201ENST00000516045 100 ntBASIC1.29□□□□□ -2.2
VIMP08670 RNU6-1337P-201ENST00000516525 95 ntBASIC1.29□□□□□ -2.2
VIMP08670 RNU6-922P-201ENST00000516753 99 ntBASIC1.29□□□□□ -2.2
VIMP08670 RNU1-92P-201ENST00000517017 135 ntBASIC1.29□□□□□ -2.2
VIMP08670 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.29□□□□□ -2.2
VIMP08670 AL161670.1-201ENST00000554348 137 ntBASIC1.29□□□□□ -2.2
VIMP08670 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
VIMP08670 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
VIMP08670 Y_RNA.70-201ENST00000362886 110 ntBASIC1.28□□□□□ -2.2
VIMP08670 Y_RNA.187-201ENST00000363918 113 ntBASIC1.28□□□□□ -2.2
VIMP08670 RNU6-457P-201ENST00000363999 107 ntBASIC1.28□□□□□ -2.2
VIMP08670 RNU6-60P-201ENST00000364792 103 ntBASIC1.28□□□□□ -2.2
VIMP08670 Y_RNA.356-201ENST00000365475 113 ntBASIC1.28□□□□□ -2.2
VIMP08670 MIR618-201ENST00000385287 98 ntBASIC1.28□□□□□ -2.2
VIMP08670 RNA5SP482-201ENST00000391269 118 ntBASIC1.28□□□□□ -2.2
VIMP08670 RNA5SP511-201ENST00000410487 115 ntBASIC1.28□□□□□ -2.2
VIMP08670 RPEP5-201ENST00000441137 268 ntBASIC1.28□□□□□ -2.2
VIMP08670 AC093850.1-201ENST00000454121 251 ntBASIC1.28□□□□□ -2.2
VIMP08670 SNORD19B-201ENST00000459623 84 ntBASIC1.28□□□□□ -2.2
VIMP08670 AL049830.1-201ENST00000468034 425 ntBASIC1.28□□□□□ -2.2
VIMP08670 RPL23AP94-201ENST00000512518 302 ntBASIC1.28□□□□□ -2.2
VIMP08670 SNORA70.12-201ENST00000516084 153 ntBASIC1.28□□□□□ -2.2
VIMP08670 RNU6-165P-201ENST00000517170 99 ntBASIC1.28□□□□□ -2.2
VIMP08670 AC093027.1-201ENST00000546698 429 ntBASIC1.28□□□□□ -2.2
VIMP08670 AC006600.1-201ENST00000572529 153 ntBASIC1.28□□□□□ -2.2
VIMP08670 MIR548S-201ENST00000581352 82 ntBASIC1.28□□□□□ -2.2
VIMP08670 U6.92-201ENST00000636464 89 ntBASIC1.28□□□□□ -2.2
VIMP08670 AC068647.2-201ENST00000637380 353 ntBASIC1.28□□□□□ -2.2
VIMP08670 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
VIMP08670 ZNF209P-201ENST00000593450 2304 ntBASIC1.27□□□□□ -2.21
VIMP08670 Y_RNA.27-201ENST00000362540 103 ntBASIC1.27□□□□□ -2.21
VIMP08670 RNU6-199P-201ENST00000362954 107 ntBASIC1.27□□□□□ -2.21
VIMP08670 Y_RNA.428-201ENST00000384078 102 ntBASIC1.27□□□□□ -2.21
VIMP08670 RNU6-1009P-201ENST00000390996 107 ntBASIC1.27□□□□□ -2.21
VIMP08670 AL354751.2-201ENST00000415471 210 ntBASIC1.27□□□□□ -2.21
VIMP08670 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.27□□□□□ -2.21
VIMP08670 MTND5P20-201ENST00000448677 143 ntBASIC1.27□□□□□ -2.21
VIMP08670 RNU7-152P-201ENST00000458982 64 ntBASIC1.27□□□□□ -2.21
VIMP08670 RNU7-12P-201ENST00000516030 62 ntBASIC1.27□□□□□ -2.21
VIMP08670 SNORD116.3-201ENST00000517176 78 ntBASIC1.27□□□□□ -2.21
VIMP08670 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.27□□□□□ -2.21
VIMP08670 VN1R91P-201ENST00000594377 169 ntBASIC1.27□□□□□ -2.21
VIMP08670 AL513534.2-201ENST00000603836 250 ntBASIC1.27□□□□□ -2.21
VIMP08670 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.26□□□□□ -2.21
VIMP08670 MIRLET7C-201ENST00000362160 84 ntBASIC1.26□□□□□ -2.21
VIMP08670 RNU6-324P-201ENST00000363957 106 ntBASIC1.26□□□□□ -2.21
VIMP08670 RNU4-41P-201ENST00000364426 143 ntBASIC1.26□□□□□ -2.21
VIMP08670 Y_RNA.263-201ENST00000364659 114 ntBASIC1.26□□□□□ -2.21
VIMP08670 SNORA25.8-201ENST00000364831 128 ntBASIC1.26□□□□□ -2.21
VIMP08670 Y_RNA.446-201ENST00000384178 104 ntBASIC1.26□□□□□ -2.21
VIMP08670 RNU6-1199P-201ENST00000411249 104 ntBASIC1.26□□□□□ -2.21
VIMP08670 AL162725.1-201ENST00000435405 301 ntBASIC1.26□□□□□ -2.21
VIMP08670 Z98949.2-201ENST00000440996 144 ntBASIC1.26□□□□□ -2.21
VIMP08670 HSPE1P13-201ENST00000451143 297 ntBASIC1.26□□□□□ -2.21
VIMP08670 OR2A41P-201ENST00000473586 105 ntBASIC1.26□□□□□ -2.21
VIMP08670 RNU6-155P-201ENST00000516347 100 ntBASIC1.26□□□□□ -2.21
VIMP08670 RNU6-966P-201ENST00000516479 104 ntBASIC1.26□□□□□ -2.21
VIMP08670 AL358944.1-201ENST00000528537 144 ntBASIC1.26□□□□□ -2.21
VIMP08670 MIR4272-201ENST00000635924 64 ntBASIC1.26□□□□□ -2.21
VIMP08670 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.26□□□□□ -2.21
VIMP08670 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.26□□□□□ -2.21
VIMP08670 RNU6-1115P-201ENST00000362490 106 ntBASIC1.25□□□□□ -2.21
VIMP08670 SNORD116-13-201ENST00000384408 92 ntBASIC1.25□□□□□ -2.21
VIMP08670 MIR653-201ENST00000385279 96 ntBASIC1.25□□□□□ -2.21
VIMP08670 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.25□□□□□ -2.21
VIMP08670 RPS4XP11-201ENST00000446897 772 ntBASIC1.25□□□□□ -2.21
VIMP08670 RNU1-123P-201ENST00000458950 160 ntBASIC1.25□□□□□ -2.21
VIMP08670 RNU6-917P-201ENST00000516294 104 ntBASIC1.25□□□□□ -2.21
VIMP08670 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.25□□□□□ -2.21
VIMP08670 AC104985.2-201ENST00000620598 500 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms