Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC025647.1-201ENST00000517879 253 ntBASIC1.93□□□□□ -2.1
LMX1BO60663 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.93□□□□□ -2.1
LMX1BO60663 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.93□□□□□ -2.1
LMX1BO60663 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.93□□□□□ -2.1
LMX1BO60663 snoZ196.1-201ENST00000625269 89 ntBASIC1.93□□□□□ -2.1
LMX1BO60663 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
LMX1BO60663 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
LMX1BO60663 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
LMX1BO60663 SNORD114-7-201ENST00000362520 77 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 RNU6-923P-201ENST00000364753 107 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 RNA5SP125-201ENST00000364843 120 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 Y_RNA.332-201ENST00000365271 113 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 RNU4-70P-201ENST00000384579 139 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 MIR221-201ENST00000385135 110 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 RN7SKP51-201ENST00000410781 304 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 BTF3P11-201ENST00000426582 477 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.92□□□□□ -2.1
LMX1BO60663 RPL23AP42-201ENST00000471152 471 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 AC074198.2-201ENST00000508153 258 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 SUMO2P18-201ENST00000518873 252 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 AP002392.1-201ENST00000537692 208 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.92□□□□□ -2.1
LMX1BO60663 MIR3117-201ENST00000584034 78 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 Z83818.1-201ENST00000603584 150 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 AL353997.5-201ENST00000618886 171 ntBASIC1.92□□□□□ -2.1
LMX1BO60663 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.92□□□□□ -2.1
LMX1BO60663 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
LMX1BO60663 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
LMX1BO60663 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.91□□□□□ -2.1
LMX1BO60663 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
LMX1BO60663 RNA5SP99-201ENST00000364020 114 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 SNORA72.4-201ENST00000384174 132 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 RNU6-1235P-201ENST00000384559 107 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 RNU6-493P-201ENST00000391321 108 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 RNU6-57P-201ENST00000411348 103 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 RPL23AP7-203ENST00000449021 469 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 RNU6-498P-201ENST00000459468 107 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.91□□□□□ -2.1
LMX1BO60663 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.91□□□□□ -2.1
LMX1BO60663 HMGB3P3-201ENST00000510526 400 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 RNU6-861P-201ENST00000516745 106 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 RNA5SP490-201ENST00000517141 136 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 IGLV3-17-201ENST00000519099 244 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 MIR5692C2-201ENST00000577959 77 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 MIR5002-201ENST00000584713 97 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 MIR4753-201ENST00000585119 83 ntBASIC1.91□□□□□ -2.1
LMX1BO60663 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
LMX1BO60663 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
LMX1BO60663 AC134026.1-201ENST00000623249 2239 ntBASIC1.9□□□□□ -2.1
LMX1BO60663 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
LMX1BO60663 AC131280.1-202ENST00000624067 4211 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 SNORA27.1-201ENST00000362604 124 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 Y_RNA.308-201ENST00000365043 101 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 Y_RNA.435-201ENST00000384095 112 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 RNU6-1248P-201ENST00000391096 64 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC1.9□□□□□ -2.11
LMX1BO60663 CYP2C59P-201ENST00000457790 269 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 RNU6-991P-201ENST00000516168 107 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 RNU6-948P-201ENST00000516374 107 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.9□□□□□ -2.11
LMX1BO60663 AC121758.2-201ENST00000553271 193 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.9□□□□□ -2.11
LMX1BO60663 AC009127.3-201ENST00000570531 403 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 MIR6895-201ENST00000613497 78 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 AC013791.1-201ENST00000616619 62 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 AL159152.1-201ENST00000635019 2587 ntBASIC1.9□□□□□ -2.11
LMX1BO60663 AC009487.4-201ENST00000624969 3585 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 RNU6-1020P-201ENST00000363684 107 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 RNU6-743P-201ENST00000364151 106 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 Y_RNA.233-201ENST00000364407 101 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 Y_RNA.262-201ENST00000364641 102 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 RNU6-117P-201ENST00000365415 107 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 Y_RNA.456-201ENST00000384232 111 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 SNORD116-13-201ENST00000384408 92 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 MIR873-201ENST00000401120 77 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 AL603908.1-201ENST00000406098 201 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 AC123900.1-201ENST00000420390 96 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 AC024067.1-201ENST00000426199 223 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 AL445687.1-201ENST00000439946 251 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 AC010598.1-201ENST00000510378 103 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 RNU6-255P-201ENST00000516957 105 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 AC100767.1-201ENST00000528178 123 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 AC087441.2-201ENST00000529141 262 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.89□□□□□ -2.11
LMX1BO60663 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.89□□□□□ -2.11
LMX1BO60663 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.89□□□□□ -2.11
LMX1BO60663 MIR3684-201ENST00000579779 74 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 MIR3616-201ENST00000584070 92 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 AC072026.1-201ENST00000605023 201 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 AC009831.4-201ENST00000620744 325 ntBASIC1.89□□□□□ -2.11
LMX1BO60663 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LMX1BO60663 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
LMX1BO60663 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
LMX1BO60663 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LMX1BO60663 RNU4-10P-201ENST00000364383 140 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 Y_RNA.270-201ENST00000364693 104 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 RNA5SP160-201ENST00000364866 120 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 Y_RNA.341-201ENST00000365341 102 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms