Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR548S-201ENST00000581352 82 ntBASIC1.61□□□□□ -2.15
VPS28Q9UK41 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
VPS28Q9UK41 MTND5P10-201ENST00000603719 1809 ntBASIC1.61□□□□□ -2.15
VPS28Q9UK41 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.6□□□□□ -2.15
VPS28Q9UK41 RNU6-926P-201ENST00000384075 107 ntBASIC1.6□□□□□ -2.15
VPS28Q9UK41 SNORD78.2-201ENST00000391076 69 ntBASIC1.6□□□□□ -2.15
VPS28Q9UK41 AC108667.1-201ENST00000428618 249 ntBASIC1.6□□□□□ -2.15
VPS28Q9UK41 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.6□□□□□ -2.15
VPS28Q9UK41 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.6□□□□□ -2.15
VPS28Q9UK41 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.6□□□□□ -2.15
VPS28Q9UK41 AL137792.2-201ENST00000443484 235 ntBASIC1.6□□□□□ -2.15
VPS28Q9UK41 MIR4303-201ENST00000581299 66 ntBASIC1.6□□□□□ -2.15
VPS28Q9UK41 AP000942.3-201ENST00000603702 160 ntBASIC1.6□□□□□ -2.15
VPS28Q9UK41 SNORA28-201ENST00000606769 126 ntBASIC1.6□□□□□ -2.15
VPS28Q9UK41 AL021879.1-201ENST00000611756 288 ntBASIC1.6□□□□□ -2.15
VPS28Q9UK41 U2.1-201ENST00000618978 145 ntBASIC1.6□□□□□ -2.15
VPS28Q9UK41 AL513423.1-201ENST00000621695 132 ntBASIC1.6□□□□□ -2.15
VPS28Q9UK41 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
VPS28Q9UK41 SNORD114-7-201ENST00000362520 77 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 RNY3P11-201ENST00000364153 102 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 Y_RNA.243-201ENST00000364481 109 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 Y_RNA.263-201ENST00000364659 114 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 RNU6-997P-201ENST00000384725 107 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 SNX2P2-201ENST00000424553 323 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 RNU1-98P-201ENST00000458992 160 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 Y_RNA.632-201ENST00000459189 102 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 Y_RNA.702-201ENST00000516843 96 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 RNU6-699P-201ENST00000517081 110 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.59□□□□□ -2.15
VPS28Q9UK41 AC084781.2-201ENST00000615568 161 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 AC073349.3-201ENST00000617616 186 ntBASIC1.59□□□□□ -2.15
VPS28Q9UK41 RNU6-961P-201ENST00000363893 105 ntBASIC1.58□□□□□ -2.16
VPS28Q9UK41 MIR517C-201ENST00000385103 95 ntBASIC1.58□□□□□ -2.16
VPS28Q9UK41 SNORA67.6-201ENST00000391093 99 ntBASIC1.58□□□□□ -2.16
VPS28Q9UK41 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS28Q9UK41 STAG3L5P-204ENST00000443759 179 ntBASIC1.58□□□□□ -2.16
VPS28Q9UK41 AC091021.1-201ENST00000468051 388 ntBASIC1.58□□□□□ -2.16
VPS28Q9UK41 RNU2-56P-201ENST00000516826 190 ntBASIC1.58□□□□□ -2.16
VPS28Q9UK41 AC023442.1-201ENST00000531247 422 ntBASIC1.58□□□□□ -2.16
VPS28Q9UK41 AL365434.2-201ENST00000607979 234 ntBASIC1.58□□□□□ -2.16
VPS28Q9UK41 AC004467.1-201ENST00000615678 330 ntBASIC1.58□□□□□ -2.16
VPS28Q9UK41 AC127459.3-201ENST00000624328 466 ntBASIC1.58□□□□□ -2.16
VPS28Q9UK41 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
VPS28Q9UK41 Y_RNA.124-201ENST00000363339 93 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 RNU1-42P-201ENST00000364033 160 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 Y_RNA.265-201ENST00000364677 108 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 RNU6-60P-201ENST00000364792 103 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 MIR1323-201ENST00000408090 73 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS28Q9UK41 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.57□□□□□ -2.16
VPS28Q9UK41 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.57□□□□□ -2.16
VPS28Q9UK41 RNU7-152P-201ENST00000458982 64 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 SNORD19B-201ENST00000459623 84 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 RNU6-341P-201ENST00000516973 96 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 RNU2-12P-201ENST00000517216 168 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 SUMO2P16-201ENST00000519475 264 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 AC006380.1-201ENST00000603598 186 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 AL645939.4-201ENST00000604495 135 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 AL078604.3-201ENST00000615580 211 ntBASIC1.57□□□□□ -2.16
VPS28Q9UK41 Y_RNA.187-201ENST00000363918 113 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 Y_RNA.356-201ENST00000365475 113 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.56□□□□□ -2.16
VPS28Q9UK41 Y_RNA.428-201ENST00000384078 102 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 Y_RNA.529-201ENST00000384586 119 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 SNORA12.1-201ENST00000390873 148 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 AC236972.2-201ENST00000434979 310 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 AL135790.2-201ENST00000437701 267 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.56□□□□□ -2.16
VPS28Q9UK41 SNORA70.12-201ENST00000516084 153 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 RNU6-1012P-201ENST00000516606 109 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 RNU7-28P-201ENST00000516759 62 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.56□□□□□ -2.16
VPS28Q9UK41 AP002004.2-201ENST00000531656 154 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 AC015720.1-201ENST00000565251 277 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 AC091178.2-201ENST00000584401 117 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 AC138305.3-201ENST00000624988 240 ntBASIC1.56□□□□□ -2.16
VPS28Q9UK41 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
VPS28Q9UK41 Y_RNA.146-201ENST00000363549 102 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 SNORD115-30-201ENST00000364117 82 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 Y_RNA.267-201ENST00000364679 109 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 RNU6-117P-201ENST00000365415 107 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 Y_RNA.463-201ENST00000384271 102 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 MIR520G-201ENST00000385064 90 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 RNU4-62P-201ENST00000410125 130 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.55□□□□□ -2.16
VPS28Q9UK41 Y_RNA.638-201ENST00000459374 113 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 SNORD116.3-201ENST00000517176 78 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 SNORA31.24-201ENST00000517232 57 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 VN1R91P-201ENST00000594377 169 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 AC005176.2-201ENST00000596933 147 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 SNORD3E-202ENST00000627253 216 ntBASIC1.55□□□□□ -2.16
VPS28Q9UK41 Y_RNA.27-201ENST00000362540 103 ntBASIC1.54□□□□□ -2.16
VPS28Q9UK41 Y_RNA.361-201ENST00000365515 120 ntBASIC1.54□□□□□ -2.16
VPS28Q9UK41 MIR660-201ENST00000385235 97 ntBASIC1.54□□□□□ -2.16
VPS28Q9UK41 MIR1304-201ENST00000408243 91 ntBASIC1.54□□□□□ -2.16
VPS28Q9UK41 AC023790.1-201ENST00000482174 347 ntBASIC1.54□□□□□ -2.16
VPS28Q9UK41 RNU6-507P-201ENST00000516045 100 ntBASIC1.54□□□□□ -2.16
VPS28Q9UK41 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms