Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC113410.1-201ENST00000505029 247 ntBASIC0.42□□□□□ -2.34
USP42Q9H9J4 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.42□□□□□ -2.34
USP42Q9H9J4 RNA5SP395-201ENST00000516567 118 ntBASIC0.42□□□□□ -2.34
USP42Q9H9J4 RNU6-1116P-201ENST00000517269 99 ntBASIC0.42□□□□□ -2.34
USP42Q9H9J4 AL360085.1-201ENST00000604713 532 ntBASIC0.42□□□□□ -2.34
USP42Q9H9J4 RNU6-89P-201ENST00000606519 100 ntBASIC0.42□□□□□ -2.34
USP42Q9H9J4 AC242852.1-201ENST00000612151 96 ntBASIC0.42□□□□□ -2.34
USP42Q9H9J4 AL391903.3-201ENST00000612158 163 ntBASIC0.42□□□□□ -2.34
USP42Q9H9J4 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.42□□□□□ -2.34
USP42Q9H9J4 AC067863.3-201ENST00000624172 122 ntBASIC0.42□□□□□ -2.34
USP42Q9H9J4 Y_RNA.359-201ENST00000365498 102 ntBASIC0.41□□□□□ -2.34
USP42Q9H9J4 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.41□□□□□ -2.34
USP42Q9H9J4 MTND2P9-201ENST00000422293 931 ntBASIC0.41□□□□□ -2.34
USP42Q9H9J4 AC245047.8-201ENST00000456455 284 ntBASIC0.41□□□□□ -2.34
USP42Q9H9J4 HMGN2P26-201ENST00000463169 339 ntBASIC0.41□□□□□ -2.34
USP42Q9H9J4 RN7SKP298-201ENST00000515950 94 ntBASIC0.41□□□□□ -2.34
USP42Q9H9J4 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.41□□□□□ -2.34
USP42Q9H9J4 AC023827.1-201ENST00000569247 97 ntBASIC0.41□□□□□ -2.34
USP42Q9H9J4 MIR6718-201ENST00000616153 80 ntBASIC0.41□□□□□ -2.34
USP42Q9H9J4 AC023510.2-201ENST00000622162 746 ntBASIC0.41□□□□□ -2.34
USP42Q9H9J4 AC097520.1-201ENST00000624435 385 ntBASIC0.41□□□□□ -2.34
USP42Q9H9J4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.41□□□□□ -2.34
USP42Q9H9J4 AC134026.1-201ENST00000623249 2239 ntBASIC0.41□□□□□ -2.34
USP42Q9H9J4 RNU6-1322P-201ENST00000364309 107 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 Y_RNA.231-201ENST00000364358 102 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 Y_RNA.267-201ENST00000364679 109 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 Y_RNA.280-201ENST00000364765 112 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 SNORA20B-201ENST00000384220 132 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 RNU6-790P-201ENST00000384479 105 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 Y_RNA.582-201ENST00000391023 95 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 RNU6-1068P-201ENST00000410958 103 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 PCMTD1P1-201ENST00000455560 355 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.4□□□□□ -2.34
USP42Q9H9J4 AC010598.1-201ENST00000510378 103 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.4□□□□□ -2.34
USP42Q9H9J4 AC093303.1-201ENST00000514549 295 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 RNU6-1198P-201ENST00000516904 67 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 RNU7-172P-201ENST00000517125 64 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 AC018659.1-201ENST00000551083 169 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 AC006435.5-201ENST00000624486 112 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 AC099654.12-201ENST00000639868 649 ntBASIC0.4□□□□□ -2.34
USP42Q9H9J4 RNU6-1252P-201ENST00000363054 104 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 Y_RNA.179-201ENST00000363844 90 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 Y_RNA.412-201ENST00000384001 104 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 Y_RNA.553-201ENST00000384670 102 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 MTCO3P19-201ENST00000415864 321 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 AC092447.3-201ENST00000426027 686 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.39□□□□□ -2.35
USP42Q9H9J4 Z98949.2-201ENST00000440996 144 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 MTCO2P7-201ENST00000446518 666 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 AP000870.1-201ENST00000472927 406 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 Y_RNA.665-201ENST00000516177 98 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 RNU6-341P-201ENST00000516973 96 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 AP003716.2-201ENST00000528260 108 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.39□□□□□ -2.35
USP42Q9H9J4 MTND1P15-201ENST00000579262 949 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 AC025627.3-201ENST00000582078 182 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 PIGPP4-201ENST00000584447 307 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 AC121247.2-201ENST00000604776 136 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 AC244015.1-201ENST00000622301 99 ntBASIC0.39□□□□□ -2.35
USP42Q9H9J4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.39□□□□□ -2.35
USP42Q9H9J4 SNORD18A-201ENST00000363753 72 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 Y_RNA.184-201ENST00000363884 108 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 RNU6-128P-201ENST00000383976 107 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 SNORA36.2-201ENST00000384004 127 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 MIR517A-201ENST00000385001 87 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 DEFB108C-201ENST00000400154 252 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 ERLEC1P1-201ENST00000433806 578 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.38□□□□□ -2.35
USP42Q9H9J4 AC098869.1-201ENST00000481627 292 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AC018710.1-201ENST00000506509 158 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 SNORA70.12-201ENST00000516084 153 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 RNU6-1291P-201ENST00000516591 104 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 RNA5SP476-201ENST00000516613 103 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 RNU2-56P-201ENST00000516826 190 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.38□□□□□ -2.35
USP42Q9H9J4 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.38□□□□□ -2.35
USP42Q9H9J4 MIR5696-201ENST00000578474 85 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 POLR3GP2-201ENST00000588366 668 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 DLEU2_1.1-201ENST00000612089 120 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 DLEU2_1.2-201ENST00000614667 120 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 Z69908.1-201ENST00000622603 247 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AL008636.1-201ENST00000625038 1018 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 RNU6-280P-201ENST00000364145 104 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.38□□□□□ -2.35
USP42Q9H9J4 Y_RNA.458-201ENST00000384240 102 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 RNU6-163P-201ENST00000384396 106 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 RNU6-541P-201ENST00000384709 110 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 Y_RNA.615-201ENST00000410769 117 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 RNA5SP222-201ENST00000411039 105 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 ZNF885P-201ENST00000420174 1098 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AC244023.1-201ENST00000426884 112 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 RNU7-66P-201ENST00000459469 62 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 HMGN1P10-201ENST00000474557 553 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.38□□□□□ -2.35
USP42Q9H9J4 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.38□□□□□ -2.35
USP42Q9H9J4 SNORD111.1-201ENST00000516421 86 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 RNU7-28P-201ENST00000516759 62 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AC022868.1-201ENST00000517767 391 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AP003327.1-201ENST00000529684 127 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms