Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.45□□□□□ -2.18
LIME1Q9H400 MRPS10P1-201ENST00000448483 130 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 RPS27P1-201ENST00000450552 247 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 SUMO1P2-201ENST00000452524 304 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 RNA5SP57-201ENST00000459463 123 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 AC010469.2-201ENST00000496412 480 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 AC055872.1-201ENST00000570978 278 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 MIR5188-201ENST00000583467 113 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 AL359075.3-201ENST00000613288 217 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 AC010205.1-201ENST00000616668 449 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 AC006026.1-201ENST00000444025 1803 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
LIME1Q9H400 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
LIME1Q9H400 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.44□□□□□ -2.18
LIME1Q9H400 SNORD114-7-201ENST00000362520 77 ntBASIC1.44□□□□□ -2.18
LIME1Q9H400 Y_RNA.243-201ENST00000364481 109 ntBASIC1.44□□□□□ -2.18
LIME1Q9H400 Y_RNA.394-201ENST00000383942 103 ntBASIC1.44□□□□□ -2.18
LIME1Q9H400 SNORA20B-201ENST00000384220 132 ntBASIC1.44□□□□□ -2.18
LIME1Q9H400 AC093852.1-201ENST00000503587 266 ntBASIC1.44□□□□□ -2.18
LIME1Q9H400 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.44□□□□□ -2.18
LIME1Q9H400 HMGN1P13-201ENST00000505795 138 ntBASIC1.44□□□□□ -2.18
LIME1Q9H400 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
LIME1Q9H400 RNA5SP481-201ENST00000516814 122 ntBASIC1.44□□□□□ -2.18
LIME1Q9H400 MIR3618-201ENST00000580330 88 ntBASIC1.44□□□□□ -2.18
LIME1Q9H400 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.44□□□□□ -2.18
LIME1Q9H400 AC090971.5-201ENST00000621102 293 ntBASIC1.44□□□□□ -2.18
LIME1Q9H400 U6.115-201ENST00000636045 103 ntBASIC1.44□□□□□ -2.18
LIME1Q9H400 MTND4P29-201ENST00000503122 1372 ntBASIC1.44□□□□□ -2.18
LIME1Q9H400 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.43□□□□□ -2.18
LIME1Q9H400 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.43□□□□□ -2.18
LIME1Q9H400 SNORA27.1-201ENST00000362604 124 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 RNU6-1310P-201ENST00000384153 107 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.43□□□□□ -2.18
LIME1Q9H400 RPS20P15-201ENST00000412792 311 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 MCFD2P1-201ENST00000417812 300 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 PMCHL1-202ENST00000423102 261 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 MTND4P19-201ENST00000446659 478 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 AL163195.1-201ENST00000496941 348 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 AC097462.1-201ENST00000514125 324 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 RNU6-408P-201ENST00000515910 100 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 Y_RNA.661-201ENST00000516003 99 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 RNU7-99P-201ENST00000516271 62 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.43□□□□□ -2.18
LIME1Q9H400 MIR4255-201ENST00000579351 72 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 MIR4423-201ENST00000580922 80 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 MIR4438-201ENST00000585271 93 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 MIR6504-201ENST00000613520 61 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.43□□□□□ -2.18
LIME1Q9H400 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 AC240442.1-201ENST00000616055 283 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 AC090574.1-201ENST00000623186 233 ntBASIC1.43□□□□□ -2.18
LIME1Q9H400 MIR369-201ENST00000362155 70 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 RNU1-22P-201ENST00000363334 158 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 SNORD115-30-201ENST00000364117 82 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 RNU6-60P-201ENST00000364792 103 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 RNU6-439P-201ENST00000384188 106 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 MIR873-201ENST00000401120 77 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 AL161935.2-201ENST00000414627 60 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.42□□□□□ -2.18
LIME1Q9H400 RPL31P63-201ENST00000422565 375 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 AL160004.2-201ENST00000432935 350 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 HSPE1P9-201ENST00000440046 311 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 AC009474.2-201ENST00000451383 136 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.42□□□□□ -2.18
LIME1Q9H400 MIR3198-2-201ENST00000577868 80 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 MIR4659A-201ENST00000580269 81 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 AC022217.4-201ENST00000604389 163 ntBASIC1.42□□□□□ -2.18
LIME1Q9H400 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
LIME1Q9H400 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
LIME1Q9H400 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
LIME1Q9H400 RNU6-271P-201ENST00000363858 105 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 Y_RNA.230-201ENST00000364348 109 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 RNU6-392P-201ENST00000364926 101 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 RNU6-926P-201ENST00000384075 107 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 RNU6-360P-201ENST00000390944 104 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 MIR1302-11-201ENST00000408051 138 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 MIR1302-9-201ENST00000408365 138 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 MIR1302-10-201ENST00000408734 138 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 EBAG9P1-201ENST00000418955 543 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.41□□□□□ -2.18
LIME1Q9H400 AL606517.2-201ENST00000442855 241 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 HMGN1P7-201ENST00000491722 313 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 AC025465.3-201ENST00000510570 311 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 RNU1-142P-201ENST00000516682 145 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 RN7SKP295-201ENST00000517264 153 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 AC023442.1-201ENST00000531247 422 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 CBX3P4-201ENST00000538909 354 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.41□□□□□ -2.18
LIME1Q9H400 AC015720.1-201ENST00000565251 277 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 SNORD53B-201ENST00000577887 78 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 AL121655.1-201ENST00000605811 308 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 MIR1302-2-201ENST00000607096 138 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 AC011476.5-201ENST00000615594 130 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 AC007485.1-201ENST00000616755 206 ntBASIC1.41□□□□□ -2.18
LIME1Q9H400 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
LIME1Q9H400 Y_RNA.31-201ENST00000362574 102 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 Y_RNA.80-201ENST00000362996 102 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 Y_RNA.101-201ENST00000363154 102 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 Y_RNA.148-201ENST00000363557 117 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 148.1 ms