Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 Y_RNA.183-201ENST00000363882 113 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 Y_RNA.361-201ENST00000365515 120 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 AC069257.2-201ENST00000441819 155 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 AC023790.1-201ENST00000482174 347 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 RNVU1-2-201ENST00000516326 135 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-764P-201ENST00000516396 105 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 MIR3198-2-201ENST00000577868 80 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 AC113195.1-201ENST00000579952 141 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 MIR502-201ENST00000606349 86 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 PART1_1.1-201ENST00000611761 217 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 U6.73-201ENST00000619194 103 ntBASIC1.5□□□□□ -2.17
CCDC28BQ9BUN5 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 Y_RNA.101-201ENST00000363154 102 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 RNU1-42P-201ENST00000364033 160 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 SNORD115-30-201ENST00000364117 82 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-1019P-201ENST00000364424 107 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-450P-201ENST00000364654 107 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-1175P-201ENST00000365200 107 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 SNORA20B-201ENST00000384220 132 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-1160P-201ENST00000384546 104 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-417P-201ENST00000384712 107 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 RNU11-5P-201ENST00000391216 129 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 MIR873-201ENST00000401120 77 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 AL355796.1-201ENST00000406706 323 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 RPL23AP36-201ENST00000413895 458 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 AC005042.3-201ENST00000453230 174 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 RPL23AP63-201ENST00000498752 471 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 RPL23AP94-201ENST00000512518 302 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 SNORA70.12-201ENST00000516084 153 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 AC055872.1-201ENST00000570978 278 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 MIR5094-201ENST00000578766 85 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 AL359075.3-201ENST00000613288 217 ntBASIC1.49□□□□□ -2.17
CCDC28BQ9BUN5 SNORA27.1-201ENST00000362604 124 ntBASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 Y_RNA.446-201ENST00000384178 104 ntBASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 Y_RNA.527-201ENST00000384573 102 ntBASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-130P-201ENST00000411112 103 ntBASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 AC009310.1-201ENST00000414414 451 ntBASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 AL121890.1-201ENST00000435457 205 ntBASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 MRPS10P1-201ENST00000448483 130 ntBASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-1143P-201ENST00000516125 104 ntBASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-1137P-201ENST00000517073 99 ntBASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 AC010900.2-201ENST00000604508 210 ntBASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 RAC1P9-201ENST00000604990 392 ntBASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC28BQ9BUN5 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 Y_RNA.143-201ENST00000363520 106 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 MIR1304-201ENST00000408243 91 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 RNA5SP100-201ENST00000410903 110 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 RNA5SP59-201ENST00000410922 110 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-1199P-201ENST00000411249 104 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 HSPE1P24-201ENST00000450782 238 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 RPS26P45-201ENST00000471748 340 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 RNU7-99P-201ENST00000516271 62 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-155P-201ENST00000516347 100 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 RNU1-142P-201ENST00000516682 145 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-897P-201ENST00000517135 105 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 MIR4438-201ENST00000585271 93 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 AC011373.1-201ENST00000607270 237 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 AC245060.5-201ENST00000610778 3293 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 AC010615.1-201ENST00000594254 1764 ntBASIC1.47□□□□□ -2.17
CCDC28BQ9BUN5 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 AL356292.1-201ENST00000283110 373 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 RNU6-112P-201ENST00000363599 104 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 Y_RNA.153-201ENST00000363615 91 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 SNORA63D-201ENST00000364359 132 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 RNU6-937P-201ENST00000384325 106 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 MIR606-201ENST00000384851 96 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 MIR520A-201ENST00000384862 85 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 SNORD115-46-201ENST00000390982 71 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 RNA5SP323-201ENST00000391094 133 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 RNA5SP467-201ENST00000391274 118 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 AL031003.1-201ENST00000404229 172 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 SNORA11.2-201ENST00000408318 127 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 AC245047.4-201ENST00000433189 144 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 RPS29P23-201ENST00000458635 123 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 RPS27P22-201ENST00000478056 241 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 SEPT14P8-201ENST00000508026 178 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 AC025465.3-201ENST00000510570 311 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 RNA5SP20-201ENST00000515976 84 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 SNORA40.15-201ENST00000516884 107 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 AC131281.1-201ENST00000522984 164 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 AC084364.2-201ENST00000546924 395 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 BX248123.2-201ENST00000606318 124 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 SNORD113-5-201ENST00000607261 78 ntBASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC28BQ9BUN5 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 226.5 ms