Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC010469.2-201ENST00000496412 480 ntBASIC1.62□□□□□ -2.15
CCDC3Q9BQI4 RNU2-12P-201ENST00000517216 168 ntBASIC1.62□□□□□ -2.15
CCDC3Q9BQI4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.62□□□□□ -2.15
CCDC3Q9BQI4 MIR4423-201ENST00000580922 80 ntBASIC1.62□□□□□ -2.15
CCDC3Q9BQI4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 MTND4P29-201ENST00000503122 1372 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 MIR369-201ENST00000362155 70 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 RNU6-961P-201ENST00000363893 105 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 SNORA20B-201ENST00000384220 132 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 RNU6-474P-201ENST00000384243 107 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 AL355796.1-201ENST00000406706 323 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 RNU6-321P-201ENST00000410912 106 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 AL390729.2-201ENST00000416137 156 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 AC096644.2-201ENST00000429278 159 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 FTH1P12-201ENST00000432137 551 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 MRPS10P1-201ENST00000448483 130 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 RNU1-142P-201ENST00000516682 145 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 RNU7-128P-201ENST00000517247 62 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 RN7SKP295-201ENST00000517264 153 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 DNAJC19P9-201ENST00000555084 351 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 RPS29P30-201ENST00000600975 111 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 AC006157.1-201ENST00000611750 366 ntBASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.61□□□□□ -2.15
CCDC3Q9BQI4 AC005592.1-201ENST00000566527 1640 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 SNORA27.1-201ENST00000362604 124 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 RNU6-626P-201ENST00000363354 107 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 RNU4-50P-201ENST00000364361 141 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 SNORA63.7-201ENST00000365579 123 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 AC117470.1-201ENST00000381974 330 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 Y_RNA.445-201ENST00000384168 102 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 RNU6-708P-201ENST00000384217 107 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 MIR873-201ENST00000401120 77 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 RNU2-54P-201ENST00000410299 190 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 RNA5SP57-201ENST00000459463 123 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 RNU7-94P-201ENST00000459576 63 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 Y_RNA.673-201ENST00000516306 88 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 SNORA31.17-201ENST00000516953 127 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 SNORD53B-201ENST00000577887 78 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 Y_RNA.772-201ENST00000606692 102 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 AL512598.1-201ENST00000610158 273 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 AC004467.1-201ENST00000615678 330 ntBASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC3Q9BQI4 MIR337-201ENST00000362281 93 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 SNORD14.1-201ENST00000365609 90 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 RNU6-20P-201ENST00000384106 107 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 Y_RNA.458-201ENST00000384240 102 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 SNORD63-201ENST00000384262 68 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 RNA5SP467-201ENST00000391274 118 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 AL354751.2-201ENST00000415471 210 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 SNORA44.1-201ENST00000517031 108 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 RNU6-988P-201ENST00000519081 107 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 AC022616.4-201ENST00000522985 181 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 CBX3P4-201ENST00000538909 354 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 AC005176.2-201ENST00000596933 147 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 AL359821.1-201ENST00000605519 182 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 AC007485.1-201ENST00000616755 206 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.59□□□□□ -2.15
CCDC3Q9BQI4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.31-201ENST00000362574 102 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 SNORD115-30-201ENST00000364117 82 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.226-201ENST00000364337 114 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 RNU6-950P-201ENST00000384651 107 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.551-201ENST00000384661 102 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 MIR548P-201ENST00000408336 84 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 RNU5A-5P-201ENST00000411054 116 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 MTCYBP6-201ENST00000441810 138 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 RNU7-95P-201ENST00000459222 64 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 U8.20-201ENST00000459445 131 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 AL163195.1-201ENST00000496941 348 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 AC005840.1-201ENST00000498412 377 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 TRMT112P2-201ENST00000512910 132 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.711-201ENST00000516993 102 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.721-201ENST00000517207 102 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 AC040926.1-201ENST00000530195 238 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 HSBP1P1-201ENST00000555205 166 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 MIR3198-2-201ENST00000577868 80 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 MIR4438-201ENST00000585271 93 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 AL390123.1-201ENST00000603216 237 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 AC022441.3-201ENST00000605737 136 ntBASIC1.58□□□□□ -2.16
CCDC3Q9BQI4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 RNU1-22P-201ENST00000363334 158 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.148-201ENST00000363557 117 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 SNORA33-201ENST00000363664 130 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 RNU6-926P-201ENST00000384075 107 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.570-201ENST00000384750 101 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 MIR562-201ENST00000384894 95 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 RNA5SP323-201ENST00000391094 133 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 RNU6-1199P-201ENST00000411249 104 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 MTCO2P12-201ENST00000427426 682 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 167.3 ms