Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 Y_RNA.498-201ENST00000384460 102 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
VPS39Q96JC1 SNORA40.6-201ENST00000391153 128 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.24□□□□□ -2.21
VPS39Q96JC1 PGBD4P5-201ENST00000445958 426 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 CHEK2P4-201ENST00000450340 246 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 RNU6-470P-201ENST00000515954 104 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 RN7SKP49-201ENST00000516675 260 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 AC024995.1-201ENST00000523014 93 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 AL137100.2-201ENST00000555786 315 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 MIR5690-201ENST00000583739 73 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 UBE2V2P2-201ENST00000587677 504 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 AL132765.2-201ENST00000610812 351 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 AC021506.2-201ENST00000612354 169 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 MIR8054-201ENST00000620877 86 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 AC091812.1-201ENST00000432235 1948 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 AC073544.1-201ENST00000600110 1595 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.23□□□□□ -2.21
VPS39Q96JC1 RNU6-1266P-201ENST00000362794 105 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 Y_RNA.124-201ENST00000363339 93 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 SNORA7.1-201ENST00000363750 139 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 RNU6-950P-201ENST00000384651 107 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 RAB28P5-201ENST00000427490 651 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 Y_RNA.653-201ENST00000459091 95 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.23□□□□□ -2.21
VPS39Q96JC1 AC010598.1-201ENST00000510378 103 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 RNU6-408P-201ENST00000515910 100 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 RNU6-875P-201ENST00000516488 106 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 SUMO2P16-201ENST00000519475 264 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 MIR3664-201ENST00000579074 99 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.23□□□□□ -2.21
VPS39Q96JC1 AC022432.1-201ENST00000595739 310 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 AC073413.2-201ENST00000604332 360 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 MIR1302-1-201ENST00000637932 143 ntBASIC1.23□□□□□ -2.21
VPS39Q96JC1 RNU5F-3P-201ENST00000363767 117 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 RNU6-407P-201ENST00000365280 104 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 RNU6-1264P-201ENST00000383891 107 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 Y_RNA.577-201ENST00000384794 101 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 MIR559-201ENST00000385188 96 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 RNU6-440P-201ENST00000390882 105 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 MTCYBP4-201ENST00000401524 249 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 Y_RNA.592-201ENST00000410274 109 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 AP1B1P2-201ENST00000416196 106 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 BTF3P4-201ENST00000418852 495 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 AC245047.3-201ENST00000429428 127 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.22□□□□□ -2.21
VPS39Q96JC1 MRPS10P1-201ENST00000448483 130 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 RNU6-625P-201ENST00000459412 107 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 OR2A41P-201ENST00000473586 105 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 RNU7-99P-201ENST00000516271 62 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 RNU6-699P-201ENST00000517081 110 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 RNU6-264P-201ENST00000517134 104 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 AC093027.1-201ENST00000546698 429 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 AL355375.2-201ENST00000574825 175 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 AL390123.1-201ENST00000603216 237 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 AC011476.5-201ENST00000615594 130 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 U6.115-201ENST00000636045 103 ntBASIC1.22□□□□□ -2.21
VPS39Q96JC1 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 Y_RNA.58-201ENST00000362807 102 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 RNU1-22P-201ENST00000363334 158 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 Y_RNA.154-201ENST00000363624 102 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 RNY3P1-201ENST00000365085 102 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 RNY3-201ENST00000365484 102 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 Y_RNA.529-201ENST00000384586 119 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 RNU6-136P-201ENST00000384663 107 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 RNU6-1031P-201ENST00000384773 107 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 SNORA69.1-201ENST00000390904 137 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 MTND4P28-201ENST00000426217 387 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.21□□□□□ -2.22
VPS39Q96JC1 RNU6-966P-201ENST00000516479 104 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 RNU6-63P-201ENST00000516690 95 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 RNU6-307P-201ENST00000516743 106 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 Y_RNA.718-201ENST00000517110 102 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 RNA5SP404-201ENST00000517118 132 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.21□□□□□ -2.22
VPS39Q96JC1 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.21□□□□□ -2.22
VPS39Q96JC1 AL021879.1-201ENST00000611756 288 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 AC138305.3-201ENST00000624988 240 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.21□□□□□ -2.22
VPS39Q96JC1 MIR3674-201ENST00000636576 68 ntBASIC1.21□□□□□ -2.22
VPS39Q96JC1 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
VPS39Q96JC1 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
VPS39Q96JC1 Y_RNA.259-201ENST00000364619 101 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 Y_RNA.387-201ENST00000383918 102 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 RNY3P14-201ENST00000384309 102 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 RNU6-1297P-201ENST00000384415 104 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.2□□□□□ -2.22
VPS39Q96JC1 AC018865.2-201ENST00000423631 129 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.2□□□□□ -2.22
VPS39Q96JC1 UBE2V1P7-201ENST00000446395 340 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 ELOCP24-201ENST00000456370 334 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 Y_RNA.632-201ENST00000459189 102 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 AC097462.1-201ENST00000514125 324 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 RNA5SP20-201ENST00000515976 84 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 RNU7-172P-201ENST00000517125 64 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 AC023442.1-201ENST00000531247 422 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 AC112487.2-201ENST00000637950 304 ntBASIC1.2□□□□□ -2.22
VPS39Q96JC1 SNORA27.1-201ENST00000362604 124 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 Y_RNA.314-201ENST00000365114 102 ntBASIC1.19□□□□□ -2.22
VPS39Q96JC1 Y_RNA.356-201ENST00000365475 113 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 209.4 ms