Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RNU6-470P-201ENST00000515954 104 ntBASIC1.64□□□□□ -2.15
SKA1Q96BD8 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SKA1Q96BD8 Y_RNA.265-201ENST00000364677 108 ntBASIC1.63□□□□□ -2.15
SKA1Q96BD8 SNORD26-201ENST00000384147 75 ntBASIC1.63□□□□□ -2.15
SKA1Q96BD8 Y_RNA.474-201ENST00000384341 102 ntBASIC1.63□□□□□ -2.15
SKA1Q96BD8 SNORA67.6-201ENST00000391093 99 ntBASIC1.63□□□□□ -2.15
SKA1Q96BD8 Y_RNA.605-201ENST00000410577 105 ntBASIC1.63□□□□□ -2.15
SKA1Q96BD8 RNU6-321P-201ENST00000410912 106 ntBASIC1.63□□□□□ -2.15
SKA1Q96BD8 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.63□□□□□ -2.15
SKA1Q96BD8 RNU7-28P-201ENST00000516759 62 ntBASIC1.63□□□□□ -2.15
SKA1Q96BD8 AC087588.2-201ENST00000617667 426 ntBASIC1.63□□□□□ -2.15
SKA1Q96BD8 AC127459.3-201ENST00000624328 466 ntBASIC1.63□□□□□ -2.15
SKA1Q96BD8 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.63□□□□□ -2.15
SKA1Q96BD8 MTND5P10-201ENST00000603719 1809 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 SNORD114-7-201ENST00000362520 77 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 Y_RNA.142-201ENST00000363491 102 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 Y_RNA.384-201ENST00000383909 102 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 Y_RNA.387-201ENST00000383918 102 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 MIR517C-201ENST00000385103 95 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 RN7SKP51-201ENST00000410781 304 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 RPL30P13-201ENST00000418873 348 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 AL137792.2-201ENST00000443484 235 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.62□□□□□ -2.15
SKA1Q96BD8 RNU6-408P-201ENST00000515910 100 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 RNU6-120P-201ENST00000516077 103 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 RNU6-341P-201ENST00000516973 96 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 AL512310.8-201ENST00000550183 120 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.62□□□□□ -2.15
SKA1Q96BD8 AC005828.6-201ENST00000606610 232 ntBASIC1.62□□□□□ -2.15
SKA1Q96BD8 RNU6-454P-201ENST00000364292 107 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 Y_RNA.259-201ENST00000364619 101 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 Y_RNA.267-201ENST00000364679 109 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 MIR660-201ENST00000385235 97 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 RNU6-1304P-201ENST00000411374 106 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.61□□□□□ -2.15
SKA1Q96BD8 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.61□□□□□ -2.15
SKA1Q96BD8 FCF1P4-201ENST00000448326 183 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 RPL39P38-201ENST00000467018 153 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 AC091021.1-201ENST00000468051 388 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.61□□□□□ -2.15
SKA1Q96BD8 AP002004.2-201ENST00000531656 154 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 AP002001.1-203ENST00000534002 267 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.61□□□□□ -2.15
SKA1Q96BD8 MIR4303-201ENST00000581299 66 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 UBE2V2P2-201ENST00000587677 504 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 MIR8065-201ENST00000620577 100 ntBASIC1.61□□□□□ -2.15
SKA1Q96BD8 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SKA1Q96BD8 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.61□□□□□ -2.15
SKA1Q96BD8 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.6□□□□□ -2.15
SKA1Q96BD8 Y_RNA.243-201ENST00000364481 109 ntBASIC1.6□□□□□ -2.15
SKA1Q96BD8 MIR520G-201ENST00000385064 90 ntBASIC1.6□□□□□ -2.15
SKA1Q96BD8 AC099799.1-201ENST00000439809 192 ntBASIC1.6□□□□□ -2.15
SKA1Q96BD8 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.6□□□□□ -2.15
SKA1Q96BD8 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.6□□□□□ -2.15
SKA1Q96BD8 AC105758.1-201ENST00000506038 399 ntBASIC1.6□□□□□ -2.15
SKA1Q96BD8 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.6□□□□□ -2.15
SKA1Q96BD8 CYP3A52P-201ENST00000563326 91 ntBASIC1.6□□□□□ -2.15
SKA1Q96BD8 AC006380.1-201ENST00000603598 186 ntBASIC1.6□□□□□ -2.15
SKA1Q96BD8 RNU4-76P-201ENST00000364509 141 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 MIR628-201ENST00000385229 95 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 MIR320A-201ENST00000385302 82 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
SKA1Q96BD8 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.59□□□□□ -2.15
SKA1Q96BD8 MTCO3P10-201ENST00000455912 772 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 SNORA70.12-201ENST00000516084 153 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 RN7SKP88-201ENST00000516847 250 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 MIR3664-201ENST00000579074 99 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 AC005730.3-201ENST00000583067 366 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 BX248123.2-201ENST00000606318 124 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 7SK.8-201ENST00000612110 250 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 7SK.11-201ENST00000615477 250 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 7SK.13-201ENST00000622040 250 ntBASIC1.59□□□□□ -2.15
SKA1Q96BD8 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SKA1Q96BD8 AL391987.6-201ENST00000305671 199 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 MIR26B-201ENST00000362251 77 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 RNU6-490P-201ENST00000362985 107 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 Y_RNA.226-201ENST00000364337 114 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 RNU6-60P-201ENST00000364792 103 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 Y_RNA.314-201ENST00000365114 102 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 RNY3P4-201ENST00000384428 101 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 RN7SKP101-201ENST00000411376 320 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.58□□□□□ -2.16
SKA1Q96BD8 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.58□□□□□ -2.16
SKA1Q96BD8 RNU7-95P-201ENST00000459222 64 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 RNU7-169P-201ENST00000459456 61 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 AC005840.1-201ENST00000498412 377 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 RNU1-92P-201ENST00000517017 135 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 SNORA31.24-201ENST00000517232 57 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 AC023442.1-201ENST00000531247 422 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 AC091178.2-201ENST00000584401 117 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 AC004467.1-201ENST00000615678 330 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.58□□□□□ -2.16
SKA1Q96BD8 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
SKA1Q96BD8 AP000648.3-201ENST00000623539 4507 ntBASIC1.57□□□□□ -2.16
SKA1Q96BD8 RNU1-42P-201ENST00000364033 160 ntBASIC1.57□□□□□ -2.16
SKA1Q96BD8 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.57□□□□□ -2.16
SKA1Q96BD8 Y_RNA.390-201ENST00000383932 102 ntBASIC1.57□□□□□ -2.16
SKA1Q96BD8 RNU6-926P-201ENST00000384075 107 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms